Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g1885 ATGGCCGAACTTCATTCCACTTCAAATTCAACTCTAACTCCTCCTCCGTCTACTTCCGCGGGTAACAATGAATCTTCTGGAGCTTCACCGTCGACTTCCCGAGGCCGTCGCAACGATCAGAACGCCGCTGACCGATCTCAGGCTCGATTCCGGTCGCCTGAAATTGAACCGATCGTTGGCCATGCTGGCAGAGTCATTGGCTGGGGAATCGGGGACGAGTCGTCGTCTGTTAGGGAAGATGCATGGTCATGCTTTGCTGTTGTATTCATGTTTTGGTTTTTCGTGTCGGTGACTATAATACTTGGGGTTTATGGGTCCATGAATCTCTTGCTTGGTCCAGAAACATCGATTGTGTTCCAACCTAGCCCTCTGTTCGTGCAATATCTCAGGGTAGAAAACTTAGAAGAAAAGCCAGGTCCTGTCGTGTATGGTACTTACCAATATCCAGATCTTGATGTTATTACCACTTGGGAACAAACTCTGCATGTAACTATTCCCTCTGACACACATCAGGAATGGATTTATTATCTGAATACAGGTTCAGAAGTGAATATTTCATATCATTTGAGCCCTGTGAGCTCGTCCGTTCTCCTTATAATTGCAGATGGGGCTGAAAGCCTCGCTCAGTGGATTGAATACCCTACATACCGTAATTCAACTCTCTCATGGAACATGATCCATGGTATGACAAAGGTAAAGATAAATTTTATACTCATATTAAACCTATGTTTGATGCTCATTTATTTTTTCACAGGAGCTGGTATGATTACACAGAAAATACACAGGTCGTCGAGCTATTATGTAGCGTTGGGAAATTTGGATGAGGTGGTGCAGGTGGAACTAAACCTCACAGTTAGGGCCTACTTGCACAATACAAAGAATGCTTACTACAAATATGCCTTGGCAAGTAGAAGTTCGTGCAGTTTGAGCATTTTCTTTCCACAAGGAAACGCAGCTATCTTGACTACTCCTGGTCCACAAAAGAATGCATCAGATGATGAATGGTACGTCAAAGTGACCTATGGACCTAGATGGATCACATATATTGTAGGCATAGGTGGATTGACTTTGCTTATGTTTTGGGCATTCAACCTCTTGAACAATCTCCAGTTTGCCCGTGAAGAAAGATCAGGAGTTATGAACAATGGGACGGCACCTGATAGAGGCCCTTTGCGCTCTCGAAAAGATGATGACCTTTCCAGCTGGGGTTCATCATATGATTCACTGTCACAAGATGACGAAGATCTTGACTCTCAGGCCGGAGGTTCCGCGGAGGGGAAGTCTCTAGGTGATGGAGAAATTAGTAACAATACTCGGCGTCTCTGTGCCATTTGCTTTGATGCTCCGAGGGATTGTTTCTTTCTTCCTTGTGGGCACTCTGCAGCTTGTTTTGAATGTGGAACTAGGATCGCCGAGGCTGCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAAGTGAGAAAGATTTTTACTGTTTGA 1482 0.4474 MAELHSTSNSTLTPPPSTSAGNNESSGASPSTSRGRRNDQNAADRSQARFRSPEIEPIVGHAGRVIGWGIGDESSSVREDAWSCFAVVFMFWFFVSVTIILGVYGSMNLLLGPETSIVFQPSPLFVQYLRVENLEEKPGPVVYGTYQYPDLDVITTWEQTLHVTIPSDTHQEWIYYLNTGSEVNISYHLSPVSSSVLLIIADGAESLAQWIEYPTYRNSTLSWNMIHGMTKVKINFILILNLCLMLIYFFTGAGMITQKIHRSSSYYVALGNLDEVVQVELNLTVRAYLHNTKNAYYKYALASRSSCSLSIFFPQGNAAILTTPGPQKNASDDEWYVKVTYGPRWITYIVGIGGLTLLMFWAFNLLNNLQFAREERSGVMNNGTAPDRGPLRSRKDDDLSSWGSSYDSLSQDDEDLDSQAGGSAEGKSLGDGEISNNTRRLCAICFDAPRDCFFLPCGHSAACFECGTRIAEAAGTCPVCRRNMKKVRKIFTV* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g1885 493 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 2 493 - -
Ahy14g1885 493 SUPERFAMILY RING/U-box 441 487 - -
Ahy14g1885 493 Pfam Domain of unknown function (DUF4793) 255 361 IPR032010 -
Ahy14g1885 493 MobiDBLite consensus disorder prediction 1 37 - -
Ahy14g1885 493 MobiDBLite consensus disorder prediction 379 431 - -
Ahy14g1885 493 ProSiteProfiles Zinc finger RING-type profile. 442 481 IPR001841 -
Ahy14g1885 493 PANTHER OS05G0521000 PROTEIN 2 493 IPR044586 GO:0004842
Ahy14g1885 493 SMART ring_2 442 480 IPR001841 -
Ahy14g1885 493 MobiDBLite consensus disorder prediction 1 50 - -
Ahy14g1885 493 Pfam Domain of unknown function (DUF4792) 139 207 IPR032008 -
Ahy14g1885 493 Pfam Zinc finger, C3HC4 type (RING finger) 439 487 - -
Ahy14g1885 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 493 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g1885 Ahy-Chr14 107240060 107245912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g1885 421 490 C3H Transcription Factor Family AT3G06140 28.571 5.43e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g1885 - - ahf:112743648 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1885 14 107240060 107245912 Ahy14g1885 14 107240060 107245912 ECH
Ahy14g1885 14 107240060 107245912 Ahy4g1665 4 98647709 98653347 hybridization