Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g1292 ATGGCGACGGAGCAAACCAAGTTCAGCGTTATGTGCAGCCTCTTCAACTGGACGCAGCGTGCCAAGTCGCCGGCCAAGAAGCGCGCAAAGTTCCGCAAGTTCCTCGACTCATTCTGCGCCGACCGCAACTTCTTCCCTGCCATTCGCCTCGTCCTCCCCAACCTCGACCGCGAGCGCGGCTCCTACGGCCTCAAGGAGTCAGTCCTCGCCATTTCCCTCATCGACGCCCTCGGCATGTCTCGCGACTCCGAAGACGCCCTTCGCCTCATTAATTGGCGCAAGGGCGGCGCCAAGACCGGCGCCAATGCCGGCAATTTCGCCCTCGTCGCCACCGAGGTACTGCAGCGCAGGCAAGGTACTGCTTCGGGTGGATTGACGATAAAGGAGGTAAATGACTTGCTTGATCAGTTGGCTGCTAGTGAAAACAGGGCCGAGAAGACTCAGGTTCTTTCTACCTTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAGTCCTCAAAGATCTGAAGCTAGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCTGATGCTGAAGACTTATTTAATGTTACATGCGACTTAAAATTAGTGTGTGAAAAACTAAGGGATCGGAATCAGCGTCATAAGCGACAGGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAGCTAGCTAAGAGAGTTGCTAATGCAGCTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTCGAGTGCAAATTTGATGGTGACCGCATTCAAATTCACAAAAATGGAACAGAGATACATTTCTTCTCGAGGAACTTCCTTGATCATTCAGAATATGCACATGCAATGTCAGAAATCATACAGCAAAACATCTTGGTAGATAGGTGCATACTTGATGGTGAAATGTTGGTTTGGGACAGTTCCTTGAATCGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGACAGTGACAGACAGTTATGCTATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACTTTGAAGGAACGACATGAGATTCTCCGTAAAGTTGTGAGGCCATTGAAGGGGCGCCTTGAAATTTTAGTACCTAATGGTGGTCTTAATAGTCATTGCTCTTCAGGTGAACCATGTTGGTCATTCATTGCTCATAATGTGGATGAAGTTGAGAAATTTTTCAAAGAAACTATAGAGAACAGAGATGAGGGAATAGTTGTTAAAGACCTCGGTTCTAAATGGGAGCCTAGTGATCGAAGTGGAAAGTGGCTAAAATTGAAGCCTGAGTACATTCAAGCTGGCGCTGATCTGGATGTGCTTATCATAGGAGGTTATTATGGCTCTGGACGACGTGGAGGGGAGGTTGCTCAGTTCTTGGTGGGCCTTGCTGAGCGTCCATCCCCAAATACACATCCCAAGCGGTTTATCTCCTTCTGTAGAGTTGGTACTGGGCTTTCTGATGATGAGCTTGATGCGTTAGTAACAAAACTAAAACCTTACTTCCGAAAGTATGAATATCCGAAGAAGAGGCCGCCAAGTTTCTATCAAGTAACTAATCATTCAAAAGAAAGGCCTGATGTGTGGGTTGATAGCCCTGAGAAATCGATTATTCTGTCCATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCGTACAGCCTGAGGTTTCCTCGGATTGACAGGGTGAGATATGACAAAGCTTGGTACGAATGCCTTGATGTGCAATCATTCATAGAACTAGTACAGTCCAGCAATGGTACTACTCAGAGGGATACAGAAACCAAGCAGGGTGGCAAATCAAATCGTATAAGGTCCTCCATAAGGGGAGAAAAGAAAATCATGTCCATTGTTCCTTCTCATTTAACTCAGACTGATGTTTCCAGTATCAAGGGAGACTCTCATATATTTTCAAATATGATGTTTTACTTCGTTAATGTGCCTCCATCTCATTCTCTTGAGAGCTTGCACAAAATGATTGCTGAGAATGGGGGAGTTTTCTCGATGAACTTAAATAACTCTGTCACTCATCGTGTGGCGGCAGAGAGCAAGGGGTTTAAATTTGAAGCTGCAAAACGTCATGGTGATATCATTCACTACAGTTGGATATTAGATTGCTGCTCACAAAAGAAGCTTATCCCCTTACAGCCAAAGTACTTCCTCTTCCTATCTGAAGTAACAAGGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCTGACTCTTACTACATGTATATTGATCTTGGAGAGTTCAAACAGACTTGTTTGAATCTTTTGCAGCTCTTAAACACTATTAATAGGTCAGAAGATATCAGTACTATTGATCATTACAGCAAAAAATACTGCCCAAAGGATGAGTGGTCTGTCTTTATTGGATGCTCCATATATTTCCACACTGCAATACCATCAGTCTCTGGTCATTCAACATTTTTATTCAGGAAAGGGGAATGGGAAGTTCTATTGCAACTTGCTTTGAGAAGATTCAAGGTTGAAGTTCTCATGGGCGGTGGTAGAGTTACTGATAAACTTACTTGTGCAACCCATTTAGTTGTCTTGTCAGTTCCAGGATATGATGCCGAATTTGATGAGCTACAGAGATGTTTTACTTCAGTGGATAGGAGGTTTCTCCAGAGCAAGAGGTTGCATATAATAAAATCCCATTGGTTTGAAGATTGTCTGGACAATAACAAAAGATTACCAGAAGAAAGTTACAGCTTGAGGCCCTCTGTAATAGCAGAGTCAACATCTGAAAATGGGTCAGTTATGTGGATCCATTTGCCTTTAATGTTTGATATACCTGCACAAGTGCTTGAAAATGACACCTTAGAGTCTCACTTTGGTGGAGACAATGTACAAGACCAGAATGTACCCTCTGAAAAGGAAAATAGACAGAGAAGTGCAAAAGCTGCTCATGAACACAGTTTGGCCACGGTGTCCCATGAGAATGTTGGCCCAAGGAAGAGAGGAAGACCTGCAGGGAGAGGTGTTAAAAATGTTAAGATGGCTGGCAACAAAGCCCAAAGAGCACGGCCACGCACTGTGAGAAAGCGTGCGAAAATAAGCGAATATGAATCAGACAAAAGTGATTCTCATGACAATGAACCAGAAGAGCAGGAGAATGACACCGGAGAAGCAAGTTTTGATATTTACAATAGACATTTGGAACCTCAGGAGGTCGAGCAACAGGCCAATGTCCAAGTTGCCGAAACAGAAGAAAGTTCTGAACCAAACAGGGCAGTGCATGATTTGAGGAATAGTAGTGAGAGTGAAAGAATGTATGTTCCAGAAATAAAAATGGCAGATAGGACCAATGACCAAAACAGTGAATTGGCTAATGAGATTGAAAATCGGGCTGATCCCATGTTATTTGACAAGATTCCCGGCCTTGCTACCGCCAAGAAAGTTGAGGACACTAAGCATTGTGATCTAAAAGAAGAGAGGCCAGCTGCAGCAGCAGAAAGCAGTAGCACCAATGCTGCTGAACCTACAATCACTAAGAAAAAGAAAGTTAGCTACAAGGACGTTGCCAATGACCTGCTCAAAGATTGGTAG 3606 0.4354 MATEQTKFSVMCSLFNWTQRAKSPAKKRAKFRKFLDSFCADRNFFPAIRLVLPNLDRERGSYGLKESVLAISLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFALVATEVLQRRQGTASGGLTIKEVNDLLDQLAASENRAEKTQVLSTFIQKTNAQEMKWIIMIVLKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIQQNILVDRCILDGEMLVWDSSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERHEILRKVVRPLKGRLEILVPNGGLNSHCSSGEPCWSFIAHNVDEVEKFFKETIENRDEGIVVKDLGSKWEPSDRSGKWLKLKPEYIQAGADLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVQSSNGTTQRDTETKQGGKSNRIRSSIRGEKKIMSIVPSHLTQTDVSSIKGDSHIFSNMMFYFVNVPPSHSLESLHKMIAENGGVFSMNLNNSVTHRVAAESKGFKFEAAKRHGDIIHYSWILDCCSQKKLIPLQPKYFLFLSEVTRKKLQEEIDEFSDSYYMYIDLGEFKQTCLNLLQLLNTINRSEDISTIDHYSKKYCPKDEWSVFIGCSIYFHTAIPSVSGHSTFLFRKGEWEVLLQLALRRFKVEVLMGGGRVTDKLTCATHLVVLSVPGYDAEFDELQRCFTSVDRRFLQSKRLHIIKSHWFEDCLDNNKRLPEESYSLRPSVIAESTSENGSVMWIHLPLMFDIPAQVLENDTLESHFGGDNVQDQNVPSEKENRQRSAKAAHEHSLATVSHENVGPRKRGRPAGRGVKNVKMAGNKAQRARPRTVRKRAKISEYESDKSDSHDNEPEEQENDTGEASFDIYNRHLEPQEVEQQANVQVAETEESSEPNRAVHDLRNSSESERMYVPEIKMADRTNDQNSELANEIENRADPMLFDKIPGLATAKKVEDTKHCDLKEERPAAAAESSSTNAAEPTITKKKKVSYKDVANDLLKDW* 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g1292 1201 PANTHER DNA LIGASE 4 3 924 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Ahy14g1292 1201 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 443 - -
Ahy14g1292 1201 SUPERFAMILY BRCT domain 797 926 IPR036420 -
Ahy14g1292 1201 MobiDBLite consensus disorder prediction 974 988 - -
Ahy14g1292 1201 Pfam ATP dependent DNA ligase C terminal region 466 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Ahy14g1292 1201 Pfam BRCT domain, a BRCA1 C-terminus domain 652 735 IPR001357 -
Ahy14g1292 1201 MobiDBLite consensus disorder prediction 1092 1109 - -
Ahy14g1292 1201 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 8 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ahy14g1292 1201 Pfam ATP dependent DNA ligase domain 227 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ahy14g1292 1201 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Ahy14g1292 1201 MobiDBLite consensus disorder prediction 1034 1052 - -
Ahy14g1292 1201 Gene3D DNA ligase/mRNA capping enzyme 221 444 - -
Ahy14g1292 1201 SMART BRCT_7 652 728 IPR001357 -
Ahy14g1292 1201 SMART BRCT_7 826 914 IPR001357 -
Ahy14g1292 1201 CDD BRCT_DNA_ligase_IV_rpt1 654 740 - -
Ahy14g1292 1201 Gene3D BRCT domain 664 777 IPR036420 -
Ahy14g1292 1201 CDD OBF_DNA_ligase_IV 449 593 - -
Ahy14g1292 1201 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Ahy14g1292 1201 MobiDBLite consensus disorder prediction 962 1060 - -
Ahy14g1292 1201 Coils Coil 127 150 - -
Ahy14g1292 1201 MobiDBLite consensus disorder prediction 1162 1186 - -
Ahy14g1292 1201 CDD Adenylation_DNA_ligase_IV 215 447 IPR044125 GO:0005524
Ahy14g1292 1201 Pfam DNA ligase N terminus 8 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ahy14g1292 1201 Gene3D - 445 606 IPR012340 -
Ahy14g1292 1201 MobiDBLite consensus disorder prediction 1078 1109 - -
Ahy14g1292 1201 ProSiteProfiles BRCT domain profile. 650 738 IPR001357 -
Ahy14g1292 1201 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 62 600 IPR000977 GO:0003910|GO:0005524|GO:0071897
Ahy14g1292 1201 SUPERFAMILY Nucleic acid-binding proteins 451 601 IPR012340 -
Ahy14g1292 1201 ProSiteProfiles BRCT domain profile. 854 924 IPR001357 -
Ahy14g1292 1201 Gene3D BRCT domain 804 924 IPR036420 -
Ahy14g1292 1201 ProSiteProfiles ATP-dependent DNA ligase family profile. 330 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ahy14g1292 1201 SUPERFAMILY BRCT domain 654 739 IPR036420 -
Ahy14g1292 1201 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g1292 Ahy-Chr14 30365971 30379843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g1292 215 602 Core DNA Replication Machinery Family AT1G08130 28.713 3.26e-32 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g1292 K10777 - gmx:100816002 1769.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1292 14 30365971 30379843 Ahy4g1192 4 32642266 32662368 hybridization