Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g1256 ATGGATTCTTCTTCTTCTGGTTCCACATTCTACGACCTACCTCCCCTCAAGAGACTCAGATTACAACTCCAACAACAACAACAACACACTCCCTTACCTGCCAAGAAGCGCAAAGATTCCCGAAACGCTGCGTTTTACGAAAACCTGAACCCAAATCCAATCCCTCCTTCCGCCACTGCTTATTGTTTACCCGCCAAGAAAAGAGTATGCGCTTTTCAACCCTTCCTCCCACAAAACGACGCCGTTTCACCCTTCCAAATCGACCTCAACCTCGAATACCAAGAAACCGACAAAAAGCTCCAATCTCTCCCCTCATCTCCCCAAAAGCGTCAAGAGCAATATCTTGACGGCAACGGTAACGTCAACGATTGCGATGATGTTGACGTTGACGTTGACGACGGGATTTTATGCTGTGTGTGCCAGAGCACAGACGGAGACCCTACGGATCCAATCGTATTTTGCGACGGTTGCGACCTAATGGTCCACGCTTCCTGCTACGGAAACCCGCTCTCAAAGTCAATCCCAGACGGAGACTGGTTCTGCGAACGGTGTCGTTTCAAAGACGAAGAAGCTGCTTCAGATGCGTCCTCTGTTTCTTGCTGCTGCTGCCTCTGTCCGGTGACCGAAGGCGCGATGAAAAAGACAACGGATAACCGTTGGGCTCACATCGTTTGCGCGCTACTGGTGCCGGAGGTGTTCTTCTTGGATCCTGAAGGGAGAGAGGGAATCGATTGTTCTATGGTTCCGAAGAAGAGGTGGTTGGAGAGGTGCTATGTTTGTGATTCTTGTGATGGTTGTGCTGTTGTGTGCTCTGAGCCAAAGTGCGGTTTGGCGTTTCATGTTACGTGTGGGATTAAAGAGGAGCTTTGTATTGAGTATAAGCAAGGCAAGAAGGGTGCTACCATTGTTGCTGGCTTCTGCAAAACCCACACCCAAATTTGGGACAAGCAATCAGGGAAATACAAAATTGTTGCGGTTGAAGATGAAGTATAG 993 0.4904 MDSSSSGSTFYDLPPLKRLRLQLQQQQQHTPLPAKKRKDSRNAAFYENLNPNPIPPSATAYCLPAKKRVCAFQPFLPQNDAVSPFQIDLNLEYQETDKKLQSLPSSPQKRQEQYLDGNGNVNDCDDVDVDVDDGILCCVCQSTDGDPTDPIVFCDGCDLMVHASCYGNPLSKSIPDGDWFCERCRFKDEEAASDASSVSCCCCLCPVTEGAMKKTTDNRWAHIVCALLVPEVFFLDPEGREGIDCSMVPKKRWLERCYVCDSCDGCAVVCSEPKCGLAFHVTCGIKEELCIEYKQGKKGATIVAGFCKTHTQIWDKQSGKYKIVAVEDEV* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g1256 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 192 IPR013083 -
Ahy14g1256 330 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 108 327 - -
Ahy14g1256 330 CDD PHD_BRPF_JADE_like 136 184 - -
Ahy14g1256 330 ProSiteProfiles Zinc finger PHD-type profile. 134 187 IPR019787 -
Ahy14g1256 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 313 IPR013083 -
Ahy14g1256 330 SUPERFAMILY FYVE/PHD zinc finger 131 187 IPR011011 -
Ahy14g1256 330 ProSitePatterns Zinc finger PHD-type signature. 137 184 IPR019786 -
Ahy14g1256 330 ProSiteProfiles Extended PHD (ePHD) domain profile. 199 311 IPR034732 -
Ahy14g1256 330 Pfam PHD-zinc-finger like domain 202 310 - -
Ahy14g1256 330 CDD ePHD 210 310 - -
Ahy14g1256 330 Pfam PHD-finger 137 186 IPR019787 -
Ahy14g1256 330 SMART PHD_3 256 311 IPR001965 -
Ahy14g1256 330 SMART PHD_3 136 185 IPR001965 -
Ahy14g1256 330 PANTHER PHD FINGER PROTEINS 108 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g1256 Ahy-Chr14 28586189 28587796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g1256 12 329 C2H2 Transcription Factor Family AT3G14740 50.742 4.75e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy14g1256 zf-HC5HC2H_2 8.10E-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g1256 K11380 - gmx:100786929 366.696