Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g1080 ATGTTCTGCACTTCACAATCACACTCTTTGACGGTTTCATACCTCATCAATAACCTTGGCTTCACCCCACAATCTGCTCTAAACGCATCAAAACGGCATCGTTTCAAGACCCCACACAAGGCAGACTTAATCATCGCATTCTTCAAGACCCATGGATTCTCCCATTCCCAAATCGCTTCCATTGTTGCTAAGCTACCTAAGATACTTTCAGCCAATCCGGAAAGAATCCTGCCAAAGTTTCAATTTCTGGCCTCCAAAGGTGCTTCCACCGATGACATTGTTCTGCTAGCCACTAGGAACCCTAGATTCTTGCATTCGAGCCTCAAGAACAACATAATCCCTACTTATGGAATGATGAACACCTTCTTTGAATCCGATCAGAAAACGCTCCGTTGCATTGCTTCTTTCCCTGCTTTGTTCATGGAGCCTCGCTTGCCAAAAAATGTCAAGTTGTTGGCTGATGCAGGAGTATCTAACTCCGCAATCCGCCATTTGTATCGTACCAGAGTGTCCGTGCTCTTTTCTTCTGATTTGAGGAAGCCTGTGGATGAAGTAAAGGAATTAGGGTTTGATCCGTCATCGGTTAAATTCGCCATAGCTTTGCTAGCCAAGAAGACTATACGGAAATCACTGTGGGATGCGAAAGTCGATATCTTGAAGAGCTGGGGTTGGTCTAAAGAAACAACGTCCCAAGCATTCAGGAGGAACCCTTTATGTATGCTATCATCTAAGGATAAGATTAATGAGGTGATGAAACTTTGGGTCAATCAATTAGGTTGGGACCCTTTGAGTCTTGCCAAGATTCCATGGCTTTTTGGATATAATTTGGAGAGAAGGATTATTCCAAGGGCTTTTGTTCTCCAGTATTTACTTTCAAGAGGTCTGAGAAACAAGAATGATGATTTAAGTACCCCATTTTATGTTTCTGAAGAGTTGTTCTTTAACAAGTTTGTGGAATGTTTTACCAAGGAAAGGTCTCAACTACGTAAGATATACTATGAGAAAAAAGGATGTTCATGA 1020 0.4206 MFCTSQSHSLTVSYLINNLGFTPQSALNASKRHRFKTPHKADLIIAFFKTHGFSHSQIASIVAKLPKILSANPERILPKFQFLASKGASTDDIVLLATRNPRFLHSSLKNNIIPTYGMMNTFFESDQKTLRCIASFPALFMEPRLPKNVKLLADAGVSNSAIRHLYRTRVSVLFSSDLRKPVDEVKELGFDPSSVKFAIALLAKKTIRKSLWDAKVDILKSWGWSKETTSQAFRRNPLCMLSSKDKINEVMKLWVNQLGWDPLSLAKIPWLFGYNLERRIIPRAFVLQYLLSRGLRNKNDDLSTPFYVSEELFFNKFVECFTKERSQLRKIYYEKKGCS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g1080 339 Pfam mTERF 46 195 IPR003690 GO:0003690|GO:0006355
Ahy14g1080 339 Pfam mTERF 214 310 IPR003690 GO:0003690|GO:0006355
Ahy14g1080 339 Gene3D Transcription termination factor 3, mitochondrial 125 330 IPR038538 -
Ahy14g1080 339 SMART mt_12 94 126 IPR003690 GO:0003690|GO:0006355
Ahy14g1080 339 SMART mt_12 262 296 IPR003690 GO:0003690|GO:0006355
Ahy14g1080 339 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Ahy14g1080 339 SMART mt_12 130 158 IPR003690 GO:0003690|GO:0006355
Ahy14g1080 339 SMART mt_12 163 191 IPR003690 GO:0003690|GO:0006355
Ahy14g1080 339 SMART mt_12 59 89 IPR003690 GO:0003690|GO:0006355
Ahy14g1080 339 PANTHER CGI-12 PROTEIN-RELATED 5 335 IPR003690 GO:0003690|GO:0006355
Ahy14g1080 339 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 5 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g1080 Ahy-Chr14 19272079 19273098 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ahy14g1080 mTERF 2.10E-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g1080 K15032 - gmx:102666739 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1080 14 19272079 19273098 Ahy4g0983 4 19394071 19398776 hybridization
Ahy11g2542 11 141295574 141296719 Ahy14g1080 14 19272079 19273098 PCT
Ahy1g2382 1 101897266 101901529 Ahy14g1080 14 19272079 19273098 PCT
Ahy14g1080 14 19272079 19273098 Ahy11g2542 11 141295574 141296719 PCT
Ahy14g1080 14 19272079 19273098 Ahy1g2382 1 101897266 101901529 PCT