Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g0260 ATGAGAGGAAGGAGTTACAGCCCGTCACCACCGCCGGCAAGGGGTTACAGCCGAAGAGGAAGGAGTCCGAGCCCAAGAGGCCGCTACTCTAGCCGCTCTAGAGATCTCCCTACCAGCCTTCTTGTTCGTAACCTTCGCCATGATTGTAGGCCTGAGGACCTTCGCAGACCTTTTGGTCAGTTTGGTGCCCTTAAGGACATTTACTTGCCCAAGGATTATTACACTGGAGAACCCCGTGGTTTTGGTTTTGTCCAGTATGTGGATCCTGCTGATGCGGCAGATGCCAAATATCATATGGATGGTCAAGTTCTACTTGGTCGGGAGTTGACTGTTGTCTTTGCTGAGGAGAATAGAAAGAAGCCAAGTGAGATGAGAACAAGGGAGAGAAGGGGCCGATATGATCGAAGAAGATCTCCTCCTCGTTATTCTCGATCACCCCGCTACTCTCGATCCCCACCACCACGTCATAGGTCTCGTTCCCATAGTCGTGACTATTATTCCCCTCCTCCTAAAAGAAGGGAATATTCAAGATCTCCCTCGCCTGAAGGTAGAAGGTACAGTCGAGAAAGATCATATTCACATCATAGTAGAGAGAGGTCATCCTCGCGTTCTCCACCCTATAACGGTGGCTCAAGGAGCCGAAGTCAGAGTCCGGCAAAGGGCCCAACCCATAGCAGAAGTCCAACCCCAGACCGTGATGTTAGGGAACTGGCAGCGCGCAGGTCCCCAGCCAGTGAGAACGTCAAGTAA 750 0.516 MRGRSYSPSPPPARGYSRRGRSPSPRGRYSSRSRDLPTSLLVRNLRHDCRPEDLRRPFGQFGALKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPSEMRTRERRGRYDRRRSPPRYSRSPRYSRSPPPRHRSRSHSRDYYSPPPKRREYSRSPSPEGRRYSRERSYSHHSRERSSSRSPPYNGGSRSRSQSPAKGPTHSRSPTPDRDVRELAARRSPASENVK* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g0260 249 SMART rrm1_1 39 112 IPR000504 GO:0003723
Ahy14g0260 249 MobiDBLite consensus disorder prediction 1 37 - -
Ahy14g0260 249 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 230 - -
Ahy14g0260 249 MobiDBLite consensus disorder prediction 118 249 - -
Ahy14g0260 249 MobiDBLite consensus disorder prediction 226 242 - -
Ahy14g0260 249 MobiDBLite consensus disorder prediction 118 141 - -
Ahy14g0260 249 SUPERFAMILY RNA-binding domain, RBD 38 143 IPR035979 GO:0003676
Ahy14g0260 249 MobiDBLite consensus disorder prediction 158 201 - -
Ahy14g0260 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Ahy14g0260 249 Gene3D - 29 145 IPR012677 -
Ahy14g0260 249 MobiDBLite consensus disorder prediction 202 224 - -
Ahy14g0260 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Ahy14g0260 249 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g0260 Ahy-Chr14 3769567 3773305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g0260 38 168 Eukaryotic Initiation Factors Gene Family AT4G34110 25.954 6.34e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g0260 K12900 - gmx:100775883 246.899