Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g0001 ATGTCAGCCACAGAACCACCTTCATTCCAAGAAGCAGCGCGATGTGTTGTCTGCAATTGCAGTTTCAACACTTTCAGGAGACGGCATCATTGTCGATCCTGTGGGAGAACTTTGTGCAATGAACATTCATCAAATCAAATGGCTTTACCTCAATTTGGCATTTACTCAAGTGTCCGAGTATGTGCTGATTGTTTCAACAATTCAAGGTCTGGGAATGGTTTAAGACAGGCTTCTTCCGGTGGAGTGAGCAGCATAACGGATACAATTTCTAAAATAGATATCGATGCCAATGATGATCCAAAAACCATTCCTACTGCAGGGAGTACACTTGCATTGGGCATTAAAGAGTGTATGTGTGGAATGCCTCTTTGCATTTGTGAGTCTGAGGCTCCCACACCTTCCTCTTCTGCACAACCTCGGCAGATATCCTCTCCGGCTATTACCTCTGAATCAAATCCTAAACCTAAGAAGGCAGATACTGCTCCAAAAAATAGAAGCTCCAGTTCATCTAGCAAGTTTAGTTCTGCTTTTGGTCATGTAACCAATGGGACATCGGAGAGAAGCCAGACCGATTATGGAGCCAATGGAGAGGGTTTAAGAGAAGCAATAAAAAATGGTGACGTAGCTGCTGTCAAGAAACTTCTTGATGAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGGCTATCGTTACTGCATTTGGCTGCGGTCTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGTGCGAGCCTGGAGTACAAAAATGCACAAGGAGAAACACCTTTAGATTGTGCACCAGCTACCTTACAGTACAAAATGCGAAAGAAGATAGAAGACGGTGGAACAATGAACCAAAGCATTTGA 873 0.4353 MSATEPPSFQEAARCVVCNCSFNTFRRRHHCRSCGRTLCNEHSSNQMALPQFGIYSSVRVCADCFNNSRSGNGLRQASSGGVSSITDTISKIDIDANDDPKTIPTAGSTLALGIKECMCGMPLCICESEAPTPSSSAQPRQISSPAITSESNPKPKKADTAPKNRSSSSSSKFSSAFGHVTNGTSERSQTDYGANGEGLREAIKNGDVAAVKKLLDEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKIEDGGTMNQSI* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g0001 290 SUPERFAMILY Ankyrin repeat 199 270 IPR036770 -
Ahy14g0001 290 SUPERFAMILY FYVE/PHD zinc finger 11 69 IPR011011 -
Ahy14g0001 290 SMART ANK_2a 194 223 IPR002110 GO:0005515
Ahy14g0001 290 SMART ANK_2a 227 256 IPR002110 GO:0005515
Ahy14g0001 290 MobiDBLite consensus disorder prediction 130 194 - -
Ahy14g0001 290 Pfam Ankyrin repeats (3 copies) 201 268 IPR002110 GO:0005515
Ahy14g0001 290 ProSiteProfiles Ankyrin repeat profile. 227 259 IPR002110 GO:0005515
Ahy14g0001 290 MobiDBLite consensus disorder prediction 162 192 - -
Ahy14g0001 290 MobiDBLite consensus disorder prediction 130 155 - -
Ahy14g0001 290 Pfam FYVE zinc finger 10 67 IPR000306 GO:0046872
Ahy14g0001 290 Gene3D - 177 275 IPR036770 -
Ahy14g0001 290 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Ahy14g0001 290 CDD FYVE_scVPS27p_like 9 65 - -
Ahy14g0001 290 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 3 283 - -
Ahy14g0001 290 ProSiteProfiles Ankyrin repeat region circular profile. 227 258 - -
Ahy14g0001 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 70 IPR013083 -
Ahy14g0001 290 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 9 69 IPR017455 -
Ahy14g0001 290 SMART fyve_4 1 70 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g0001 Ahy-Chr14 31521 35253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g0001 205 265 MAP Kinase Kinase Kinase AT4G18950 40.984 2.64e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g0001 - - ahf:112696126 568.926