LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g4612	ATGAAAGGGTGTTGCAAACTTGCAATGAAGGAGTCTGTAGACCATTCTTATCCTGGTCCAACCAAGATTCCATCAGAAAATACACCTAAAGAAGTGCAACAAGGTGCATGGGAGGATTTATCTAGATCTGATCTATACCATGTTTCATCTCATACTGGCTTCTTTTCTAGGTCATTGCCTGTTCCGTTACATGAAAAGTTGAACTTAAGCAGTGCTGATGGCTTTAAAAAGTCCCATCAAGATGTAGATGGGAATGGTTTACTTGAGGATGCTGATACTTGTGTGATAGGAACCATGCTTCCAGATGATGAGGAGGACCTTTTAGCTGATTTTGACCTAAGTGGTTTGCCAAACTCTCTTGAGGATTTGGAGGAGTATGATGTTTTTGGTAGTGGTGGAGGTATGGAACTGGAAGCTGATCCTCAGGAAAGTCTTAATGTGGGTGTGTCAAAATTAAGCTTCTCTGATGGTCATGCTGCCAATGGTTTGCCCTATAATTCTTTTCTTAATGGTGTGGGGATTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGGACATTATTTGTTCGAAATATTAATAATAATGTGGAGGATTCAGAGTTGAGAGCTCTTTTCGAGCAATATGGTCACATTAGGACTCTATATACTGCATGTAAACATCGTGGGTTTGTTATGGTATCCTATTATGACATCCGTGCTGCTCGAACAGCCATGCACGCATTACAAAACAAACCTTTACGACGCCGGAAACTTGACATTCACTTCTCAATACCAAAGGATAATCCATCTGACAAGGACATCAACCAAGGAACCTTGGTAGTTTTCAATTTGGACCCATCTGTTTCGAATGAGGACCTCCGTACAATATTTGGGGCATATGGAGAGGTCAAAGAGATACGGGAAACGTCTCACAAAGGCCATCACAAGTTTATTGAATTTTATGATGTGAGGGCTGCAGAAGCAGCACTAAAATCATTAAACAGGAGTAACATAGCTGGGAGGCGAATAAAGGTGGAGCTTAGCCGGCCTGGCAGAACTCGTCGAAATTTAGTGCTTCAAACAAATCAAGAGCTTGATCATGATGAAAAGCTAAGTTTCCGACATCAGATGGGTTCACCTGTGGCCAATTCTCCACCCGGTTACTGGTTGCGGTTCAACAGCACTGTTGAAAATAACTCATTTCAAACTATAAGCGATTCTCCTGGTTCTGGGATCATGAGTCCATCAATAGGAAACCATTTAGCTGGATTAGCTTCTGTTTTGCACCCTCCACTATCCAATGCCATGAAGGGTGTAGCTATTGGGAAAGATTTAGCAGGGAGTCAGCATGCAGAGCATATATTTGCTAGTAGTAATTCATCGCATGGAGAGACATTTCAATCTCATTCTCTTCCAGAACCAAAATTCATCCCATATAGTGGAGCTTTGTCTTCTTTTGGTTCATCTCCTTCAAATGGATCCTCGGTGGAAACCTTGTCAGGGTCACAATTTTTATGGGGAAGTCCGAACTTGTACTCACAGGACATCAAACCTTCAGCTTGGCCAACACCATCTGTGAGGCATTCATTTACAGCAAATGGAAATAGCCATGCCTTCCAAAACCCTGCTCAAGAGAGTTCTTTTATTGGTTTGTCCCACAATCGTCACCATAATCATGTTGGCTCTGCTCCATCAGGTTTTCCTTTTGAGAGAAACTTTGGAGTCCTTTCGAAGTCACCTGAAACGTCGTTCGTGAACCATGTTGGTTATGGAGGCATAGGTCTGAGTCACAGTAAGGGGAATTACATGGTTAATATGGGTGAATCTGTTAATGCCGGGATCACTATACCAAGAAATATGTCTGAACATGGTTCGCCAAACATTGGAATGAGATCATCTCCCAGACTTAGTCTTGTGTTTTCAGGTAATGGTCCATACCCAGGATTGCCACCTACTGCTACTACTACTACTACTACTACTTCAGTGTTTGGTTTCGTGGACCCTGGGCGGAATAGGCGCATAGAGAACAATGGGGGCCAAGCTGATAGCAGCAAGAAGCAATTTCATCTTGACTTGGATAGGATTAAAAACAGTGAAGACAGAAGGACTACCTTAATGATAAAGAACATCCCAAATAAATACACCTCAAAAATGTTATTAGCTGCTATTGATGAAAAGCACAAGGGTACCTATGATTTTTTCTATCTACCAATCGACTTTAAGAATAAATGCAATGTGGGATACGCATTTATCAACATGCTGTCGGCATCACACATTATTCCATTCTATGAGACATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCCCTGGCATATGCACGAATCCAAGGAAAGGCTGCATTGGTGAACCATTTCCAGAATTCAAGTCTGATGAACGAAGATGAGCGGTGCCGCCCAGTCGTCTTCCATTCACAGGATCCTGAAGGTGGTGATAAGATCATACAAGATCATACAAGTGATTCAACCTCGGAGACAAAATAA	2502	0.4205	MKGCCKLAMKESVDHSYPGPTKIPSENTPKEVQQGAWEDLSRSDLYHVSSHTGFFSRSLPVPLHEKLNLSSADGFKKSHQDVDGNGLLEDADTCVIGTMLPDDEEDLLADFDLSGLPNSLEDLEEYDVFGSGGGMELEADPQESLNVGVSKLSFSDGHAANGLPYNSFLNGVGIVAGEHPYGEHPSRTLFVRNINNNVEDSELRALFEQYGHIRTLYTACKHRGFVMVSYYDIRAARTAMHALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRTIFGAYGEVKEIRETSHKGHHKFIEFYDVRAAEAALKSLNRSNIAGRRIKVELSRPGRTRRNLVLQTNQELDHDEKLSFRHQMGSPVANSPPGYWLRFNSTVENNSFQTISDSPGSGIMSPSIGNHLAGLASVLHPPLSNAMKGVAIGKDLAGSQHAEHIFASSNSSHGETFQSHSLPEPKFIPYSGALSSFGSSPSNGSSVETLSGSQFLWGSPNLYSQDIKPSAWPTPSVRHSFTANGNSHAFQNPAQESSFIGLSHNRHHNHVGSAPSGFPFERNFGVLSKSPETSFVNHVGYGGIGLSHSKGNYMVNMGESVNAGITIPRNMSEHGSPNIGMRSSPRLSLVFSGNGPYPGLPPTATTTTTTTSVFGFVDPGRNRRIENNGGQADSSKKQFHLDLDRIKNSEDRRTTLMIKNIPNKYTSKMLLAAIDEKHKGTYDFFYLPIDFKNKCNVGYAFINMLSASHIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVNHFQNSSLMNEDERCRPVVFHSQDPEGGDKIIQDHTSDSTSETK*	834

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy13g4612	833	CDD	RRM1_MEI2_like	186	262	IPR034453	-
	Ahy13g4612	833	SUPERFAMILY	RNA-binding domain, RBD	699	784	IPR035979	GO:0003676
	Ahy13g4612	833	Gene3D	-	176	270	IPR012677	-
	Ahy13g4612	833	SMART	rrm1_1	188	256	IPR000504	GO:0003723
	Ahy13g4612	833	SMART	rrm1_1	273	341	IPR000504	GO:0003723
	Ahy13g4612	833	SMART	rrm1_1	699	775	IPR000504	GO:0003723
	Ahy13g4612	833	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	187	260	IPR000504	GO:0003723
	Ahy13g4612	833	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	189	253	IPR000504	GO:0003723
	Ahy13g4612	833	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	274	339	IPR000504	GO:0003723
	Ahy13g4612	833	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	272	345	IPR000504	GO:0003723
	Ahy13g4612	833	CDD	RRM3_MEI2_like	700	785	IPR034454	-
	Ahy13g4612	833	Pfam	RNA recognition motif 2	697	793	IPR007201	-
	Ahy13g4612	833	PANTHER	PROTEIN MEI2-LIKE 2	10	819	-	-
	Ahy13g4612	833	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	10	819	-	-
	Ahy13g4612	833	MobiDBLite	consensus disorder prediction	816	833	-	-
	Ahy13g4612	833	CDD	RRM2_MEI2_like	271	341	-	-
	Ahy13g4612	833	SUPERFAMILY	RNA-binding domain, RBD	184	348	IPR035979	GO:0003676
	Ahy13g4612	833	Gene3D	-	271	363	IPR012677	-
	Ahy13g4612	833	MobiDBLite	consensus disorder prediction	808	833	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g4612	Ahy-Chr13	146463498	146468778	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g4612	184	329	Eukaryotic Initiation Factors Gene Family	AT1G71770	28.846	2.47e-10	62.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy13g4612	-		-	gmx:100800877	1170.99