Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4602 ATGGGAATACAGGGTTTGTTGCCGCAGTTGAAATCGATAATGGCTCCGATTCACATAAAGGAGCTTGAGGGGTGCTGTGTTGCGGTGGACACATATTCATGGCTCCACAAAGGCGCACTCTCTTGCAGCACCCACCTCTGCAAAAACATTCCCACAACCAGGCACATTGAGTATTGCATGCATAGAGTGAATTTGCTGCGCCATTTTGGTATTAACCCCATTCTTGTATTTGACGGTGGACTTCTACCCATGAAGGCCGAACAAGAGAATAAGCGTGCCAGGGTAAGAAAGGAAAATTTTGCACGAGCTGTTGAACATGAGTCAAATGGAAATAACACTGCTGCTTTTGAGTGCTACCAGAAAGCTGTTGATATTTCACCTCTCATTGCGCGCGACCTAATTCAGGTATTGAGGCAGGAGAATGTGCAATATATTGTAGCTCCTTATGAGGCTGATGCTCAGATGGCTTTCTTGGCCATTAGTGGACAGGTTGATGCAGTTATAACTGAAGATTCTGATCTTATACCATTTGGATGCCCAAGGATTATCTTCAAAATGGACAAGTTTGGACAAGGAGTTGAGTTTCGGTACTCCATGTTACAGAAGAATAAGGAGCTTTGTTTTGAAGGATTTGACAGGCAAATGCTTCTCGAAATGTGTATCTTGAGTGGCTGCGACTATCTTCAGTCCTTGCCAGGTATGGGCCTGAAAAGAGCTCATGCAATCATTAAAAGATTTAAAAGTTATGACAAGGTTCTTAAGCACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTATACGAAGAGTCGTTCAGGAAGGCTATATTGACTTTCCACTTTCAACGGGTGTATGATCCAATTAATGAAAACGTTATTCATTTATCGAATATACCTGATGATATTGGTGACGAGTTAGATTTTTTAGGCCCATCACTGCCAAAAGATATAGCACAAGGCATAGCAAAAGGAGATCTCGATCCATTTACCAAAATGCCATTTGAGGGGGCGATTCTTAATCCCGGGTTAGCAACTGCTGGAACTTCACAATTTAAAACTATTCATTCTGAAAGTGTGAAGAAAAAGATTGATCTGCCTGTGCAAAAGAATCTCTTGACTAAGTATTTTTGTTTTGCATCTGTTGAAGCAAAAAGGAATTTCAGAGCACCTCGGGTACAACCCACCCCTGCTAATCATGGTACATTTGATTCCTCTTTTGTCAATTCTATGGATCACGAAACTTCAGAGGCTACAGCTAGCAAGACAAAGAACTCCGCTGCCACTTTAGTTGACTCCGAGAATTCGGACCCTGACAGTAGCCCTCCTCCTGCAAATGACTTTATTGAAAACAGCTTAGCAACCAATTTTTTTGAGTATATGAAATCTCCATCTCATGTTTCTATGGTGGGTGAAAGAAACAGAAGTCCTGAAAATACAGCACTACGACAAGTTAGGCAGCCAATTCATAAACCCTGTGTGGGGTTGCATAAGGAGCATGAGCATACACTTGTTCAAGACACGATTGAGTCAAAAACCAAGGAGGTTACAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAACAAAGTAGAAAAGAATGATTATGATGATAAACAAGCTCACCCGTCTGAAGCTGGCACTTTAATTGGTGAGAAAAAAAATTCCATATCCGACGGTGATTCAAGTGGCAATCTTGTGAAGAATAAAGACTTGAAGAGGAAAACCTCCCCTAATGACAACATTCAAAATGAAAATTTGCAACCGAGGTCTATTTGTCCTACATCACCCCCTCATGATAATGGTTACTCTGATCACAATGTTGATACACCAGATGGAAAAAATAATAACGGTGAAGAGAAATTCGGTGTAAACATTTCCCATCTAGGCCATTATTCAGAAATAGCTGAGAAATCTGTAGAAAGATTTGCCTCCGTGATCTCATCCTTCAGATGCTCTTCTGGCTCTCGTGCCAGTGGTCTCCGTGCTCCTCTAAGAGATGTTCGGAACAGTTGCAATAACAGGTAA 2025 0.4148 MGIQGLLPQLKSIMAPIHIKELEGCCVAVDTYSWLHKGALSCSTHLCKNIPTTRHIEYCMHRVNLLRHFGINPILVFDGGLLPMKAEQENKRARVRKENFARAVEHESNGNNTAAFECYQKAVDISPLIARDLIQVLRQENVQYIVAPYEADAQMAFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVEFRYSMLQKNKELCFEGFDRQMLLEMCILSGCDYLQSLPGMGLKRAHAIIKRFKSYDKVLKHLRYSGVSVPPLYEESFRKAILTFHFQRVYDPINENVIHLSNIPDDIGDELDFLGPSLPKDIAQGIAKGDLDPFTKMPFEGAILNPGLATAGTSQFKTIHSESVKKKIDLPVQKNLLTKYFCFASVEAKRNFRAPRVQPTPANHGTFDSSFVNSMDHETSEATASKTKNSAATLVDSENSDPDSSPPPANDFIENSLATNFFEYMKSPSHVSMVGERNRSPENTALRQVRQPIHKPCVGLHKEHEHTLVQDTIESKTKEVTRKVIVRSAYFQHNKVEKNDYDDKQAHPSEAGTLIGEKKNSISDGDSSGNLVKNKDLKRKTSPNDNIQNENLQPRSICPTSPPHDNGYSDHNVDTPDGKNNNGEEKFGVNISHLGHYSEIAEKSVERFASVISSFRCSSGSRASGLRAPLRDVRNSCNNR* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4602 674 Gene3D - 1 207 - -
Ahy13g4602 674 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 335 IPR036279 -
Ahy13g4602 674 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Ahy13g4602 674 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Ahy13g4602 674 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Ahy13g4602 674 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Ahy13g4602 674 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Ahy13g4602 674 PANTHER EXONUCLEASE 1 1 673 IPR032641 GO:0006281|GO:0035312
Ahy13g4602 674 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 673 IPR006084 -
Ahy13g4602 674 MobiDBLite consensus disorder prediction 396 445 - -
Ahy13g4602 674 Gene3D - 209 281 - -
Ahy13g4602 674 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Ahy13g4602 674 MobiDBLite consensus disorder prediction 578 610 - -
Ahy13g4602 674 SMART xpgineu 138 209 IPR006086 GO:0004518
Ahy13g4602 674 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Ahy13g4602 674 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Ahy13g4602 674 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Ahy13g4602 674 SMART xpgn3 1 99 IPR006085 GO:0004518
Ahy13g4602 674 MobiDBLite consensus disorder prediction 533 621 - -
Ahy13g4602 674 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Ahy13g4602 674 MobiDBLite consensus disorder prediction 390 445 - -
Ahy13g4602 674 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4602 Ahy-Chr13 146401487 146405233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4602 1 267 Core DNA Replication Machinery Family AT5G26680 28.114 1.94e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4602 K10746 - gmx:100798062 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4602 13 146401487 146405233 Ahy3g4351 3 143492116 143493733 hybridization