Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4599 ATGGATTTCCCAAACCATCATCATCAGGAATCGATGTCAGACAGTTGTTCTCAACAGAAAAAGAACAACAACATGGGAAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACAACAAACAGGCAAGTAACATTCTGCAAGAGAAGGAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCAAGCCGTGGTCGCCTCTATGAATATGCTAATAACAGTGTCAAAGCATCTATTGAGAGGTACAAGAAAGCCAGTTCAGATTCTTCTAATGGTGGATCCACTTCTGAGATTAATGCTCAGCATTACCAGCAAGAATCTGCAAAACTGCGTGTGCAAATCAGTAACCTTCAGAACCACAACAGGCAAATCTTAGGTGAGGCTTTGAGCAATATGGCTATCAAGGATCTCAAAAACCTTGAGACCAAATTGGAAAAAGGGATTAGCAAAATTCGTTCCAAGAAGAACGAGCTGCTGTTTGCAGAGATAGATTACATGCAGAAGAGGGAGGTAGACTTGCATAACAACAACCAGTTTCTTAGAGCTAAGATAGCAGAAAGTGAGAGGAACCAACATAGCAATAACAACAACAATAATGTGTTGAGTGGAGGAGGAACAAACTATAACAATAATGAATCTCATCACAATGAGCAGCATCAATTTGAGTCTCGTGGCTACTTCCAAGTCACTGCATTACAACCCAATAACAATGAAAACCATTATGCTGCTACTGCTGCTAGGCAAGATCACATGTCCCTTCAATTAGTCTAA 804 0.4042 MDFPNHHHQESMSDSCSQQKKNNNMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKASIERYKKASSDSSNGGSTSEINAQHYQQESAKLRVQISNLQNHNRQILGEALSNMAIKDLKNLETKLEKGISKIRSKKNELLFAEIDYMQKREVDLHNNNQFLRAKIAESERNQHSNNNNNNVLSGGGTNYNNNESHHNEQHQFESRGYFQVTALQPNNNENHYAATAARQDHMSLQLV* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4599 267 MobiDBLite consensus disorder prediction 10 25 - -
Ahy13g4599 267 Gene3D - 37 133 IPR036879 GO:0003677|GO:0046983
Ahy13g4599 267 ProSiteProfiles K-box domain profile. 111 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy13g4599 267 MobiDBLite consensus disorder prediction 199 231 - -
Ahy13g4599 267 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Ahy13g4599 267 CDD MADS_MEF2_like 26 102 IPR033896 GO:0000977|GO:0045944
Ahy13g4599 267 Coils Coil 111 131 - -
Ahy13g4599 267 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Ahy13g4599 267 MobiDBLite consensus disorder prediction 199 225 - -
Ahy13g4599 267 ProSitePatterns MADS-box domain signature. 27 81 IPR002100 GO:0003677|GO:0046983
Ahy13g4599 267 Coils Coil 148 168 - -
Ahy13g4599 267 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Ahy13g4599 267 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Ahy13g4599 267 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Ahy13g4599 267 MobiDBLite consensus disorder prediction 1 31 - -
Ahy13g4599 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 81 IPR002100 GO:0003677|GO:0046983
Ahy13g4599 267 Pfam K-box region 107 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy13g4599 267 SUPERFAMILY SRF-like 26 98 IPR036879 GO:0003677|GO:0046983
Ahy13g4599 267 PANTHER MADS BOX PROTEIN 19 255 - -
Ahy13g4599 267 PANTHER AGAMOUSB 19 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4599 Ahy-Chr13 146363808 146368011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4599 25 267 MADS-box Gene Family AT3G58780 61.317 2.62e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy13g4599 K-box 7.10E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4599 K09264 - gmx:732595 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4599 13 146363808 146368011 Ahy20g0267 20 2858321 2866144 PCT
Ahy13g4599 13 146363808 146368011 Ahy10g0079 10 893544 901268 PCT
Ahy20g0267 20 2858321 2866144 Ahy13g4599 13 146363808 146368011 PCT
Ahy10g0079 10 893544 901268 Ahy13g4599 13 146363808 146368011 PCT