Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4592 ATGGGTGAGTATTCATCAAGAAGCGGTGATGTTGAGGAAGCAGCAGGAGGAGGTGGTACCTGCAAAACAAGCAAATATTTTCTTCTGTTTCAGAAGATGGTGGCGGAGTTGGTGGGGACCTATTTCTTGATATTTACAGGGTGCGCAGCGATTGCGGTGAACAACGACTACGGGAAGCAAATAACGCTTCTTGGAATTGCAACTGTTTGGGGATTGGTTGTCATGGTCATCGTTTACTCCGTTGGTCATGTCTCTGGGGCCCATCTCAACCCTGCTGTAACTATTGCTTTTGCCTCCATCACAAAGTTTCCACTCACTCAGGTACCGGCTTATATAGCAGCTGAATTGCTTGGAGCGATCCTAGCAAGCGGAACAGTGAGACTAGTATTTAGTGGGAAGCATCTTGAAGTTCAGTTCACAGGAACGTTGCCGAGTGGCTCAAACATCCAATCCTTCGTCATTGAATTCATTCTCACTTTTTTCCTTATGTTTGTCATTTGCGCCGTTGCTACCGATAGCAGAGCGGTTGGTACCTTGGCTGGAGTTGCAATCGGGTCTACCATACTAATTAATGTGCTGATTGCAGCGCAAGTGTCAGGAGCATCAATGAACCCAGCAAGGAGTCTAGGACCTGCATTTGTGCACCATGAATACAGAGGAATATGGATATACTTGTTGTCACCCACCATTGGAGCTGTGGCGGGTGCATGGGTCTACAACATACTTAGGGAGAAGAAGGAGAAGCCCATCATTCACCTCACCAAGAATGCCTCTTTCAACTGA 783 0.47 MGEYSSRSGDVEEAAGGGGTCKTSKYFLLFQKMVAELVGTYFLIFTGCAAIAVNNDYGKQITLLGIATVWGLVVMVIVYSVGHVSGAHLNPAVTIAFASITKFPLTQVPAYIAAELLGAILASGTVRLVFSGKHLEVQFTGTLPSGSNIQSFVIEFILTFFLMFVICAVATDSRAVGTLAGVAIGSTILINVLIAAQVSGASMNPARSLGPAFVHHEYRGIWIYLLSPTIGAVAGAWVYNILREKKEKPIIHLTKNASFN* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4592 260 PANTHER NODULIN-26 22 259 - -
Ahy13g4592 260 CDD MIP 31 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g4592 260 Pfam Major intrinsic protein 29 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g4592 260 TIGRFAM MIP: MIP family channel proteins 35 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g4592 260 PANTHER AQUAPORIN NIP2-1 22 259 IPR034294 -
Ahy13g4592 260 ProSitePatterns MIP family signature. 88 96 IPR022357 -
Ahy13g4592 260 Gene3D Glycerol uptake facilitator protein. 10 251 IPR023271 -
Ahy13g4592 260 PRINTS Major intrinsic protein family signature 107 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g4592 260 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g4592 260 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g4592 260 PRINTS Major intrinsic protein family signature 70 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g4592 260 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g4592 260 PRINTS Major intrinsic protein family signature 31 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy13g4592 260 SUPERFAMILY Aquaporin-like 25 247 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4592 Ahy-Chr13 146281865 146285183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4592 7 259 Major Intrinsic Protein MIP AT5G37820 52.157 4.38e-89 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4592 K09874 - gmx:547904 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4592 13 146281865 146285183 Ahy3g4339 3 143388314 143392688 hybridization
Ahy13g4592 13 146281865 146285183 Ahy20g0283 20 2973063 2974427 PCT
Ahy13g4592 13 146281865 146285183 Ahy10g0093 10 997258 998935 PCT
Ahy20g0283 20 2973063 2974427 Ahy13g4592 13 146281865 146285183 PCT
Ahy10g0093 10 997258 998935 Ahy13g4592 13 146281865 146285183 PCT