LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g4591	ATGGATGAAGCTCAGAGCAGTTCCAATTCCCTGCCACCTTTTCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACTGATCCCATTGTTTCTTGGAGTGCCTCTAATAGAAGTTTCATTGTGTGGAATCCTCCGGATTTCGCTAGGGATTTGCTGCCTAGATTCTTCAAGCACAATAACTTCTCAAGCTTTATCAGGCAGCTGAACACTTATGGTTTTAAGAAGGTTGACCCTGAACAATGGGAATTCGCAAATGATGATTTTGTAAGAGGTCAACCACATCGCATGAAGAATATCCACAGACGAAAACCGGTTCATAGTCATTCTTTACAGAATCTTCAGGCGCAAGCTCCACTGACAGAATCAGAAAGGATGAGTTTACAGGATGAAATAGAGAGGCTTAACCGTGAAAAAGAACAGCTTCTTATGGAGCTACAGAGACATGAACAAGAGTGGCAAGAATATGAGATTCGAATACACTGCTCGAAAGACCGTGTGGAGAAGATGGAGCAGAAGCATCAGAAGATGATCTCTTCTGTTTCCAGTGTACTGCAGAAACCTGGAATTGACTTGAATCAATTGGCATTGCTAGAAACCACAGATAGAAAACGAAGGTTACCAAGAAATGGCTATCTTAGTGATGAAACTAACATTGAAGATACAACTGAGACCGAACAAATGTTACCCACAGAAAATTCACAGGACTCCTCCGTTTTGACAATAATCACAGAGCAGTTGGATCAGCTCGAGTCATCCATGGTATTTTGGGAAACCATTTCAAATGATATTTCTGACGCGACCATTCACATTCATTCAAGCTTGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCTGTCTATATCTTGTCCCCTACTAGATGTTGAAGTTCTGCCTAAGTCATCTGGAATTGACATGAACTCTGAGCCTGCTTCTGCTCCTGTTTCCGAGCCTGCTTCCGCATCAAAAGAACAACCTGCCGGCACAACCCCTGTGGTGGCTGGTGTTAATGATGTATTTTGGGAACAATTCTTGACAGAGAATCCTGGTTCATCAGAAGCACAGGAAGTACAATCAGAAAGAAAGTATCATGATACTAGCAAGGGTGAAGGAAAACCTAGTGACCCAGGAAAATTTTGGTGGAACATGCGAAATACAAGTAATCTTCCAGAACAAATAGGTCATGTTAGTCAAGCAGAAAAAACATAG	1212	0.4183	MDEAQSSSNSLPPFLAKTYEMVDDPSTDPIVSWSASNRSFIVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYGFKKVDPEQWEFANDDFVRGQPHRMKNIHRRKPVHSHSLQNLQAQAPLTESERMSLQDEIERLNREKEQLLMELQRHEQEWQEYEIRIHCSKDRVEKMEQKHQKMISSVSSVLQKPGIDLNQLALLETTDRKRRLPRNGYLSDETNIEDTTETEQMLPTENSQDSSVLTIITEQLDQLESSMVFWETISNDISDATIHIHSSLDFDESTSCADSLSISCPLLDVEVLPKSSGIDMNSEPASAPVSEPASASKEQPAGTTPVVAGVNDVFWEQFLTENPGSSEAQEVQSERKYHDTSKGEGKPSDPGKFWWNMRNTSNLPEQIGHVSQAEKT*	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy13g4591	403	Coils	Coil	111	159	-	-
	Ahy13g4591	403	Gene3D	-	6	104	IPR036388	-
	Ahy13g4591	403	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy13g4591	403	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy13g4591	403	SUPERFAMILY	"Winged helix" DNA-binding domain	9	103	IPR036390	-
	Ahy13g4591	403	MobiDBLite	consensus disorder prediction	304	331	-	-
	Ahy13g4591	403	MobiDBLite	consensus disorder prediction	347	403	-	-
	Ahy13g4591	403	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy13g4591	403	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy13g4591	403	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy13g4591	403	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-4C	1	384	-	-
	Ahy13g4591	403	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy13g4591	403	MobiDBLite	consensus disorder prediction	306	328	-	-
	Ahy13g4591	403	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	1	384	IPR027725	-
	Ahy13g4591	403	MobiDBLite	consensus disorder prediction	381	403	-	-
	Ahy13g4591	403	MobiDBLite	consensus disorder prediction	358	373	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g4591	Ahy-Chr13	146252733	146255115	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g4591	7	403	HSF	AT4G18880	52.941	1.46e-120	354

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Ahy13g4591		HSF_DNA-bind	1.30E-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy13g4591	K09419		-	gmx:100817602	595.504

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy13g4591	13	146252733	146255115	Ahy3g4338	3	143374611	143376964	hybridization
	Ahy13g4591	13	146252733	146255115	Ahy20g0289	20	3018785	3020863	PCT
	Ahy13g4591	13	146252733	146255115	Ahy10g0099	10	1025537	1027611	PCT
	Ahy20g0289	20	3018785	3020863	Ahy13g4591	13	146252733	146255115	PCT
	Ahy10g0099	10	1025537	1027611	Ahy13g4591	13	146252733	146255115	PCT