Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4588 ATGGCTTCTGGGGTTATATTTTCGTCGCTGCGGCGTCGCCGGTCGCCGTCGCTAGAGGCCTTTCTGGCGCCGGTGGACCTTTCCGACGAGGCACTCATCCGGACCGTCGTTGCAGTCGCCGGCGACCTCGTCACTGGCTTCTCCGATCACCGGTTATCCTTCCAGCGCAAGAACTCTCGCTCCCTAATCCGAAAGGTCGAGGTTTTTCAGCTTCTATTAGAGTCACTGAGGGATTCAAGTGTGAGTCTTCTCCCCACGGCGGCGCTCTGCTTGAGGGAGCTCTTTTTGGTGGTATATCGTTCCAAGATTCTCCTTGATTACTGCGCGCAATCGAGTAAGTTATGGCTTTTGCTTCAGAACCACTCTATTTCCGGTCACTTCCATGATTTGGGTCAAGAATTTTCGACCCTTTTGGATGTTTTCCCTGTTAGGGCCGTTGACCTTAGCGACGATGTTAGGGAACAGATTGAGTTGTTGAGGAGACAGTCTAGGAGGGCCAAATTGTTTGTGGATAAGAAGGATGATGGCCTTAGAATAAAGTTCTTTTCTTTTCTTGAGGCATTCGAGAATGGGAGGATTCCTTGTTCTGATGAATTGAGGCGTTTCTATGTTGATGAGTTGAAGATTAGTGATGCTAGGAGTTGTAGGGCTGAGATTGAAGCTTTGGAAGAGCAGATTGTTAATCATGAGGGTGATATTGAGCCAACCGTTTCTGTGCTTAATGGACTGGTGGCAATGACGCGGTGTAGCAGGTTTCTACTCTTTCGGTTTGAGGAGGAAGATGATGACTTTGGTTTGGGGAATGAGAATCAGAAGAAGGCCAAGGTGAGATTGGTTAATCAAGATGTCGCGGACAAGATTTTGACCATTCCTAAGGACTTTTGCTGTCCAATATCATTGGATTTGATGCGTGATCCGGTGATAATATCAACAGGCCAGACTTATGATCGGAGTTCCATATCAAGGTGGATGGACGAAGGGCATTCTAACTGTCCAAAAACAGGCCAAACACTTGCACACAACCGGCTTGTTCCTAACCGCACGCTTAGGAATTTGATCGTGCAGTGGTGCAGTGCACATGGAATACCCTATGATCCGCCAGAGGTAATTGATCCATCTGCTGAAACTTTTGCCTCAGCTTGTCCTGCCAAAGCTACCATGGAAGCCAATAAAGCAACTGTGGCGCTTCTCATTCAGCAGCTAGCTAATGGGTCACAATCTGGAAGGACTGTAGCTGCAAGGGAGATAAGATTGCTTGCAAAAACTGGAAAAGAGAATCGTGCCTTCATTGGAGAGGCAGGGGCAATTCCTTATCTTCGGGATTTACTTTCTTCTCCTAACACGGTCGCGCAGGAGAACTCAGTAACTGCATTGCTCAACCTATCCATTTTTGAGAGAAACAAGAGTCGCATCATGGATGAGGCAGGGTGCTTGGGATCAATAGTTGATGTGTTGAAATTTGGACAAACAACTGAGGCAAGGGAAAATGCTGCTGCAACATTGTTCAGTCTCTCTGCTGTCCATGACTATAAAAAAAGGATTGCAGATAATGTGGGAGCCGTTGAAGCACTGGCAAGTCTGTTGCAAGAGGGAACCCGAAGGGGGAAGAAGGATGCTGTGACAGCATTGTTTAATCTTTCCACCCATACTGAGAACTGCGCAAGGATGATAGCAGCAGGAGCAGTCATGGGCTTAGTCGAGGCATTGGGAAACGAAGGAATTGCTGAGGAAGCAGCAGGTGCCTTGGCCTTGATTGTCCGGCAGCCACTTGGGGCAAAAGCTGTGGTGAGTGAGCAAGCAGCAGTAGCTGGATTGATAGGAATGATGCGTTGTGGAACACCAAGAGGCAAAGAGAATGCGGTTGCTGCGTTGCTGGAGTTGTGCCGCAGCGGTGGCACAGCTGCAACTGAAAGAGTGGTTAGGGTGCCGGCTTTGGCAGGATTACTTCAAACCCTGCTCTTCACAGGAACAAAGCGAGCGAGACGAAAAGCGGCTTCACTTGCAAGAGTGTTTCAGAGATGTGAGAATGCCTCTCTGCATTATGGTGGATTGGGCCTAGGATATGCATTGGCTAGTAATTCAGCATCAACAAGGGATACAACAATTTTTGCTGGTGATGTTTCAGTACCAATGTCCATTTCTCTACCTGTATTGTAG 2157 0.4808 MASGVIFSSLRRRRSPSLEAFLAPVDLSDEALIRTVVAVAGDLVTGFSDHRLSFQRKNSRSLIRKVEVFQLLLESLRDSSVSLLPTAALCLRELFLVVYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLGQEFSTLLDVFPVRAVDLSDDVREQIELLRRQSRRAKLFVDKKDDGLRIKFFSFLEAFENGRIPCSDELRRFYVDELKISDARSCRAEIEALEEQIVNHEGDIEPTVSVLNGLVAMTRCSRFLLFRFEEEDDDFGLGNENQKKAKVRLVNQDVADKILTIPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHSNCPKTGQTLAHNRLVPNRTLRNLIVQWCSAHGIPYDPPEVIDPSAETFASACPAKATMEANKATVALLIQQLANGSQSGRTVAAREIRLLAKTGKENRAFIGEAGAIPYLRDLLSSPNTVAQENSVTALLNLSIFERNKSRIMDEAGCLGSIVDVLKFGQTTEARENAAATLFSLSAVHDYKKRIADNVGAVEALASLLQEGTRRGKKDAVTALFNLSTHTENCARMIAAGAVMGLVEALGNEGIAEEAAGALALIVRQPLGAKAVVSEQAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGTAATERVVRVPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGLGYALASNSASTRDTTIFAGDVSVPMSISLPVL* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4588 718 PANTHER U BOX DOMAIN-CONTAINING 11 695 - -
Ahy13g4588 718 Pfam Armadillo/beta-catenin-like repeat 424 462 IPR000225 GO:0005515
Ahy13g4588 718 CDD RING-Ubox_PUB 294 336 IPR045210 -
Ahy13g4588 718 Gene3D - 391 669 IPR011989 -
Ahy13g4588 718 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Ahy13g4588 718 Pfam U-box domain 290 360 IPR003613 GO:0004842|GO:0016567
Ahy13g4588 718 SMART arm_5 423 463 IPR000225 GO:0005515
Ahy13g4588 718 SMART arm_5 508 548 IPR000225 GO:0005515
Ahy13g4588 718 SMART arm_5 549 587 IPR000225 GO:0005515
Ahy13g4588 718 SMART arm_5 588 629 IPR000225 GO:0005515
Ahy13g4588 718 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Ahy13g4588 718 Coils Coil 212 232 - -
Ahy13g4588 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 364 IPR013083 -
Ahy13g4588 718 SUPERFAMILY RING/U-box 279 364 - -
Ahy13g4588 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Ahy13g4588 718 SUPERFAMILY ARM repeat 393 671 IPR016024 -
Ahy13g4588 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Ahy13g4588 718 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4588 Ahy-Chr13 146237959 146240768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4588 1 718 U-box Gene Family AT1G29340 66.033 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4588 - - mtr:MTR_2g018010 1080.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4588 13 146237959 146240768 Ahy3g4335 3 143357486 143360313 hybridization
Ahy13g4588 13 146237959 146240768 Ahy20g0291 20 3034521 3037429 PCT
Ahy13g4588 13 146237959 146240768 Ahy10g0101 10 1040427 1043301 PCT
Ahy20g0291 20 3034521 3037429 Ahy13g4588 13 146237959 146240768 PCT
Ahy10g0101 10 1040427 1043301 Ahy13g4588 13 146237959 146240768 PCT