Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4565 ATGGATCAGGCAAGAAGCGAAGACAGTGCTGAGGTGTTGGATAATGTAGTTGGAGAAGGAGTTGCAACTGATGCAGGAGATGGTAGTGAATTGGTTGAGAGAGATGATGTAGTTGGAGAAAATGGAACTTCAGATCTGGGTTTGAATACGGAGCTAGAGGAGGAGGAGGAGACTCGAGTGGTTAAGGATCAGGAAACAGCTGACTTGCAAAAAATCAGTGATACATTGTGTGGGGTTGAGCAAGGAACTAGTTATAGCTCAAGAAATTTGGTCAGTGGGGAGGTTGTACTTGAGACCTGTGTTGTAATAGATCCTCCTGCTCAGATCGAGCATGTCCATGGAAAATCGAAATCAAAAGCCAATGAATCAGGGTTGAGCAAGCTAGCCATGAAAGCACCAAAGGCAGTGTCTGAGACAGATAAAAATTCATGTGCAATTGATATAAACAAAGAGTTTAGTGAGAACTTGGAAGGTGAAATGATTTGTAGAATTTGTCATCTGGCATCAGGGCAACCAATAGAAGCAATGATGGTTGGGACTGCAAACAATGAAACTAGTACAGATTTGATTCAACTTGGTTGTGCATGTAAGGATGAGCTAGGCATTGCACACAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAGCAGGTTGTGTGAAATATGTGGAGAGACTGCAAAAAATGTTTCAGAATCACAGGTTATCAATCATTCATTTATGGAAGAGTGGAACGAAAGTAGGTTCATCGACGGTGGTAATAGTACCTCAACCGGCTTCTTTGGAAGATGCTGGCGTGGACAGCCATTCTGTAACTTTTTGATGGCATGCTTGGTAATAGCTTTCGTTCTACCATGGTTCTTCCGTGTAAATATGTTCTAG 882 0.424 MDQARSEDSAEVLDNVVGEGVATDAGDGSELVERDDVVGENGTSDLGLNTELEEEEETRVVKDQETADLQKISDTLCGVEQGTSYSSRNLVSGEVVLETCVVIDPPAQIEHVHGKSKSKANESGLSKLAMKAPKAVSETDKNSCAIDINKEFSENLEGEMICRICHLASGQPIEAMMVGTANNETSTDLIQLGCACKDELGIAHSHCAEAWFKLKGSRLCEICGETAKNVSESQVINHSFMEEWNESRFIDGGNSTSTGFFGRCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4565 293 SMART ringv_2 161 224 IPR011016 GO:0008270
Ahy13g4565 293 PANTHER ZINC FINGER, RING-CH-TYPE 1 293 - -
Ahy13g4565 293 MobiDBLite consensus disorder prediction 1 63 - -
Ahy13g4565 293 Pfam RING-variant domain 181 223 IPR011016 GO:0008270
Ahy13g4565 293 ProSiteProfiles Zinc finger RING-CH-type profile. 154 230 IPR011016 GO:0008270
Ahy13g4565 293 SUPERFAMILY RING/U-box 159 226 - -
Ahy13g4565 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 235 IPR013083 -
Ahy13g4565 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4565 Ahy-Chr13 146024073 146026675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4565 157 292 C3H Transcription Factor Family AT5G05830 40.714 1.26e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4565 - - gmx:100791129 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4565 13 146024073 146026675 Ahy3g4315 3 143178328 143180824 hybridization
Ahy13g4565 13 146024073 146026675 Ahy20g0326 20 3424893 3427491 PCT
Ahy13g4565 13 146024073 146026675 Ahy10g0138 10 1352754 1354961 PCT
Ahy20g0326 20 3424893 3427491 Ahy13g4565 13 146024073 146026675 PCT
Ahy10g0138 10 1352754 1354961 Ahy13g4565 13 146024073 146026675 PCT