Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4564 ATGGCTCACCTTAAGGAACTGCCCGCTTCTGTTGTTAATGGGAATGATTCCCTCCCTGGTAATATAATATCCACTACAATTGGTGGAAAAGATGGGGAGCCCAAACAGACTATAAGTTACATGGCAGAACGTGTCGTGGGTACTGGGTCATTTGGAATCGTTTTCCAGGCAAAATGCTTGGAAAATGGGGAGGCAGTAGCCATCAAGAAAGTTTTACAGGACAAAAGATATAAGTGTCGTGAACTAGAGTTAATGCGCATAATGGATCATCCAAATATCATCTGTCTGAAGCATCATTTCTTTTCCACTACAAGTACTGGTGAGCTGTTCCTTAATTTGGTGATGGAATATGTTCCCGAGTCTATGTATCGAGTCTTGAAGTTCTATAGCACTGCTAACCAAAGAATGCCTCTTATCTATGTTAAACTTTATATGTACCAGATTTTCAGGGGGCTGGCTTATATCCACACTGTCCCTGGAGTATGCCACAGAGATTTGAAGCCACAAAATATACTGGTTGACCCTGTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTCAAAGGAGAAACTAATATATCATATATATGTTCCCGGTTCTATCGCGCACCAGAACTCATATTTAGTGCTACTGAGTATACTACTTCAATTGATATTTGGTCAGCTGGTTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCATTGTTTCCGGGTGAAAATGCAGTGGATCAGGTTGCAGAGATTTTCAAGGTCCTTGGCACACCCACTCGAGAGGAAGTCCGCTGCATGAATCCAAACTACAACAACTTCAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGATATTCCACAAAAAGATGCCTCCCGAAGCAATTGATCTCACTTCCCGGCTTCTGCAGTATTCCCCTAGTCTCCGATGTACTGCACTAGAAGCTTGTGCACACCCATTCTTTGATGAACTTCGTGAACCCCATGCTCGCTTGCCAAATGGTCGTCCATTTCCACCACTATTCAACTTTAAACAAGAGCTATCCACAGCACCTCCAGAGCTTGTTAACAAGTTGATCCCTGGCCACATGAAGCGGCAACTAGCGCTGCAACTTCCCCATTCTGCAGGAACATGA 1143 0.4392 MAHLKELPASVVNGNDSLPGNIISTTIGGKDGEPKQTISYMAERVVGTGSFGIVFQAKCLENGEAVAIKKVLQDKRYKCRELELMRIMDHPNIICLKHHFFSTTSTGELFLNLVMEYVPESMYRVLKFYSTANQRMPLIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPVTHQVKICDFGSAKVLVKGETNISYICSRFYRAPELIFSATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQVAEIFKVLGTPTREEVRCMNPNYNNFRFPQIKAHPWHKIFHKKMPPEAIDLTSRLLQYSPSLRCTALEACAHPFFDELREPHARLPNGRPFPPLFNFKQELSTAPPELVNKLIPGHMKRQLALQLPHSAGT* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4564 380 Gene3D Transferase(Phosphotransferase) domain 1 120 367 - -
Ahy13g4564 380 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Ahy13g4564 380 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy13g4564 380 PANTHER BNAANNG31110D PROTEIN 2 374 - -
Ahy13g4564 380 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy13g4564 380 CDD STKc_GSK3 35 327 IPR039192 -
Ahy13g4564 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Ahy13g4564 380 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy13g4564 380 SUPERFAMILY Protein kinase-like (PK-like) 39 352 IPR011009 -
Ahy13g4564 380 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Ahy13g4564 380 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4564 Ahy-Chr13 146018063 146022231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4564 44 335 MAP Kinase Gene Family AT3G59790 35.526 8.98e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Ahy13g4564 Pkinase 3.80E-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4564 13 146018063 146022231 Ahy3g4314 3 143172605 143176777 hybridization
Ahy13g4564 13 146018063 146022231 Ahy20g0328 20 3439611 3443934 PCT
Ahy13g4564 13 146018063 146022231 Ahy10g0140 10 1370633 1374929 PCT