Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4539 ATGTGTATAAAGTGTGAAGAACAAAAGACCAAAGAGAAAGTGAATATGAAGAACAAGTCAAAGTTTGTTGGGGTGAGGCAAAGAGCTTCTGGAAAATGGGCAGCAGAGATCAAAGATACATCAAAGCAGATAAGGATTTGGCTTGGAACCTATCAAACTGCTGAGGAAGCTGCTAGAGCCTATGATGAAGCTGCTTTTCTCCTTAGAGGTTCCAACACTCGCACCAACTTCAACACTCGTCACACCATTGATCCCAATTCTCCTATATCTCTCAAAATCAGAAACCTGCTCGATCGTAGAACTATCTCAACTCGAATTCAAAACCAATTCCCTATGGTTAGTCCCAATGTTCAAGATGCCAAGCAAGAAAACCATGCATGTAGATATAGTGGTAGTAGTGAAGGTGAGTCTTTGTTTTGGGTTCAGAACCAAGTTTCTGATAATGTTTATAGGCCAGAATTGAATATGATGAACTGCGCAACGGGTCCGGTTGAACTAAATGAGTATCAGTTTGATTATTCATGGGCATTAGCTCAACAAAGGATTAATGAATTATCAATATTATCACCAGAAAGTGGATTCAATGAAGAAAGGAAACTGTCAGATTCACTTTTTGCCATGAATGAGGATGAACATGGGAGTGCGTATGAGTGTGATGTCAGTTATCCTCTCTCCCACTTGTTCTGCTTTAATTGA 696 0.398 MCIKCEEQKTKEKVNMKNKSKFVGVRQRASGKWAAEIKDTSKQIRIWLGTYQTAEEAARAYDEAAFLLRGSNTRTNFNTRHTIDPNSPISLKIRNLLDRRTISTRIQNQFPMVSPNVQDAKQENHACRYSGSSEGESLFWVQNQVSDNVYRPELNMMNCATGPVELNEYQFDYSWALAQQRINELSILSPESGFNEERKLSDSLFAMNEDEHGSAYECDVSYPLSHLFCFN* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4539 231 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Ahy13g4539 231 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Ahy13g4539 231 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Ahy13g4539 231 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Ahy13g4539 231 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Ahy13g4539 231 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Ahy13g4539 231 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 158 - -
Ahy13g4539 231 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Ahy13g4539 231 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Ahy13g4539 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 7 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4539 Ahy-Chr13 145756524 145758167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4539 7 229 AP2-EREBP Transcription Factor Family AT5G19790 40.476 6.96e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy13g4539 AP2 3.00E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4539 K09286 - gmx:100803832 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4539 13 145756524 145758167 Ahy3g4287 3 142893823 142895570 hybridization