Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4528 ATGAATAATCATCTGCCACAATGCCATGCATTAACAACATTACTACTGCTTCTATTATTGCATGGAGACGGAGCATCCAGCAGTGAGAGTGAAGTCGTCAAAATCGGTGCCATCTTCACATTGAAAACCATAAACGGGAGAGTTTCCAAAATTGCGATCCAAGCTGCTGAGAGGGACGTCAATGCAGATCCTCGCATCCTGGGTGGACGTAAATTGTCTATCACCGTCCATGACTCCAACTTCAGTGGCTTTCTTAGCTTCATTGGGGCCCTCAAGTTGTTGGTGACGGACACTGTAGCAATAATTGGTCCGCAAAATTCGGGGATGGCCCATGTGCTTTCGCATCTTGCAAATGAGCTCCACGTCCCTCTACTCTCCTTTACGGCTCTTGATCCCACTCTGTCGCCTCTTCAGTACCCTTATTTCGTTCAAACTGCACCCAGCGATCAGTTCCAGATGACTGCGGTGGCAGACATGATTAGCTATTATGGTTGGAGAGAGGTCATTGCGGTGTTCAGCGACGATGATCAGAGCCGAAATGGCATAACTGTGTTGGGGGATAAGCTTGCAGAGAAACGCTGTAAGTTGTCTTATAAAGCAGCACTGCCCCCTGATCCAACAGCCAGCGCAAGCGATGTATCCTCTGAGCTGGCCAAGATTCAAAGCATGGAAGCTCGAGTGGTTGTAGTGCACACCTTTGCCCAAACAGGTCTCTTGGTTTTTGATGTGGCTCAAAGACTAGGGATGATGAGGCAAGGCTATGTTTGGATAGCTACTACTTGGCTTTCAACTGTCTTAGATTCAACTTCAAACACCTCCAACTCTCTGGATATCCGGGGAGTTCTCACGCTTCGCCCTCACACCCCTTTGTCAAGACCAAAACAGGCATTCATCTCAAGGTGGAAGCACATTAGTAATGGCTCTGTTGGGTTAAACCCATACGGACTCTACGCTTATGATGCTGTTTGGACCATTGCCCACGCATTGAAGCTATTCTTTGCTGATAATGGGACCATCTCTTTCTCCAATAATACAAATTTTGGTGGTATGGCTGGTCTTGCTTCCTTGAGCATCTTTGATGGTGGGAACCAGTTACTGGATAACATACTTCGCATAAACACGACTGGATTGACAGGGCCGATTCAATTTGTTGGCTCAAACAGATCCCCCCTGCATCCATCCTATGACATCCTTAATGTACATGCCACTGGCTACAGGACTATTGGATACTGGTCCAATTACTCTGGCCTCTCTGTCACAACTCCCGAGAAACTTCACAGAAAGACATCCATCCGCTCTGTTTCAAACCAGCATCTATACAATGTGACGTGGCCTGGAAATACAAGGGAAAGGCCTCGTGGATGGGTTTTCCCCCATAGTGGGAGGCAACTCAGAATCGGGGTCCCCAACAGAGCCAGTTATCAAGGCATCGTCTCACAAATAAATGGCACCCATGTAGTTCAAGGATACTGCATAGACATATTCCTCGCTGCCATCAAATTGCTTCCATATCCAATTCAATATAGGTTCATTCTGTTTGGAGAAGGACATAAGAATCCAAGCTACTATGATCTTGTCAACATGATTGCTTCGGATGTGTTTGATGCTGCTATAGGTGACATTGCAATTGTCACTGACCGAACAAAGATCGTGGATTTTACTCAACCATATATAGAGTCAGGTCTAGTTGTGGTTGCTCCGGTTCAAAGATTGAAGTCAAGTTCTTGGGCTTTCTTGAGACCATTTACTGCACCCATGTGGGGTGTCACTGCACTTTTTTTCCTTCTTGTTGGAGCAGTGATCTGGATTCTTGAACACCGGACCAACGATGAGTTCCGAGGGCCTCCAAAGACGCAAATAGTCACTGTTCTTTGGTTTAGTTTCTCAACTATGTTCTTTGCGCACAGAGAGAACACAGTTAGCCCACTTGGTCGTGTTGTGCTGATAATATGGCTTTTTGTGGTTCTAATAATCAATTCAAGTTACACGGCAAGCTTGACGTCAATTCTAACTGTGCAGCAGCTGTCCTCACCCATAACGGGCATTGACACCTTGATAACAAGCAACAAGCCCATAGGATTCCAGGTAGGGTCATTTGCTGAGAATTATCTCACTCAGGAACTCAACATCCCAAAACATAGGCTTGTTCCCCTTGGCTCGCCAGAAGAATATGCTTCTGCCCTTGAGAAGGGAACTGTTGCCGCTGTGGTAGATGAACGCCCATATGTTGAACTCTTCCTGTCAGAACACTGCCAATTCTCAATTAGGGGCCAAGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCGGAGGGACTCTCCTTTAGCCATTGACATGTCAACTGCCATTCTGAGTCTATCCGAGAACGGTGAACTTAGCAAGATCCATGATAAGTGGCTTTCAAAGAAGGCCTGTGGTTTTCGCGGTGCACAGGATGAGCAGCTTCAATTCAACAGTTTCCGGGGCCTATTCCTGATCTGCGGGATAGCGTGTTTGGCGGCGCTCCTTATCTACTTGCCCTCGGTGGCATACCAATTCAGTCAGAACTCCCCGGAAAGAGAGAGAGGCAATCATCCTTTTGGTCATTCCAGCACCTCACGTTCTGCACGCATACAGACATTTCTAAGCTTCGTTGATGAAAAGGAAGACACATCACGCAACAGCAGCAGCAGCGGCAAGTTAAAAAGGAAACTTGAGGATATCTCATCTTCCAGATCCAGAACCAGAATCAGCCGTTTAAGGACCATGGCCATGCCCAAGAAATTACACATACACATAGGCACTTCTCAACAGTCAGGACCAAATGCCGGCTACTCAGGTTCCACCGATCAAGCAATCAAGTAG 2844 0.468 MNNHLPQCHALTTLLLLLLLHGDGASSSESEVVKIGAIFTLKTINGRVSKIAIQAAERDVNADPRILGGRKLSITVHDSNFSGFLSFIGALKLLVTDTVAIIGPQNSGMAHVLSHLANELHVPLLSFTALDPTLSPLQYPYFVQTAPSDQFQMTAVADMISYYGWREVIAVFSDDDQSRNGITVLGDKLAEKRCKLSYKAALPPDPTASASDVSSELAKIQSMEARVVVVHTFAQTGLLVFDVAQRLGMMRQGYVWIATTWLSTVLDSTSNTSNSLDIRGVLTLRPHTPLSRPKQAFISRWKHISNGSVGLNPYGLYAYDAVWTIAHALKLFFADNGTISFSNNTNFGGMAGLASLSIFDGGNQLLDNILRINTTGLTGPIQFVGSNRSPLHPSYDILNVHATGYRTIGYWSNYSGLSVTTPEKLHRKTSIRSVSNQHLYNVTWPGNTRERPRGWVFPHSGRQLRIGVPNRASYQGIVSQINGTHVVQGYCIDIFLAAIKLLPYPIQYRFILFGEGHKNPSYYDLVNMIASDVFDAAIGDIAIVTDRTKIVDFTQPYIESGLVVVAPVQRLKSSSWAFLRPFTAPMWGVTALFFLLVGAVIWILEHRTNDEFRGPPKTQIVTVLWFSFSTMFFAHRENTVSPLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDTLITSNKPIGFQVGSFAENYLTQELNIPKHRLVPLGSPEEYASALEKGTVAAVVDERPYVELFLSEHCQFSIRGQEFTKSGWGFAFRRDSPLAIDMSTAILSLSENGELSKIHDKWLSKKACGFRGAQDEQLQFNSFRGLFLICGIACLAALLIYLPSVAYQFSQNSPERERGNHPFGHSSTSRSARIQTFLSFVDEKEDTSRNSSSSGKLKRKLEDISSSRSRTRISRLRTMAMPKKLHIHIGTSQQSGPNAGYSGSTDQAIK* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4528 947 Pfam Ligand-gated ion channel 802 831 IPR001320 GO:0015276|GO:0016020
Ahy13g4528 947 Gene3D - 459 575 - -
Ahy13g4528 947 Gene3D - 576 704 - -
Ahy13g4528 947 SMART AABind_6 463 803 IPR001638 -
Ahy13g4528 947 Gene3D - 148 417 - -
Ahy13g4528 947 Pfam Bacterial extracellular solute-binding proteins, family 3 485 801 IPR001638 -
Ahy13g4528 947 Pfam Receptor family ligand binding region 51 401 IPR001828 -
Ahy13g4528 947 MobiDBLite consensus disorder prediction 880 907 - -
Ahy13g4528 947 PANTHER GLUTAMATE RECEPTOR 3.6 25 916 - -
Ahy13g4528 947 SUPERFAMILY Periplasmic binding protein-like II 442 802 - -
Ahy13g4528 947 MobiDBLite consensus disorder prediction 925 947 - -
Ahy13g4528 947 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 916 - -
Ahy13g4528 947 SUPERFAMILY Periplasmic binding protein-like I 28 456 IPR028082 -
Ahy13g4528 947 Gene3D - 766 799 - -
Ahy13g4528 947 SMART GluR_14 465 802 IPR001320 GO:0015276|GO:0016020
Ahy13g4528 947 CDD GluR_Plant 462 800 - -
Ahy13g4528 947 CDD PBP1_GABAb_receptor_plant 34 419 IPR044440 -
Ahy13g4528 947 PIRSF IGluLR_plant 5 924 IPR017103 -
Ahy13g4528 947 MobiDBLite consensus disorder prediction 880 947 - -
Ahy13g4528 947 Gene3D - 51 392 - -
Ahy13g4528 947 Gene3D - 725 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4528 Ahy-Chr13 145587010 145591008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4528 23 912 Ion Channels AT2G17260 61.148 0.0 1113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4528 K05387 - gmx:100793969 1245.34