Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4524 ATGGAATATGGTGGCATAGTGCACAATGAAAATGGTGGGTTTGGGAGCTTGTCGGAGTCAGCGGTAGAGGCAGAAGTAGATTTGGTGGACGAGCTACTGGTGGAGGGGTGCTGGGTGGAGACAACTAGTGCAGGAGGGTGCTACAACTGGATGCATAATCCATCAGATGCAGTAGTGGCGCCGCAACCACAGTACTTGGAAATGCTGCAGCTGCAGCTGCAGGAGGAATCATCATCGTCGTCATCAGATCAGGAGAGCCTTGTGGGCAAGAGGTGGTGGATCGGGCCTACTAGGCCGGGCCCTTCATCCTCTTCTTCTTCTTCTTCTTCCTCCTCTGTAAAGGAGAGATTAGTGGTCGCGGTCGGGTACTTGAAAGACTACACAAAGAACAACAATCTGCTCATTCAGATATGGGTGCCCCCACGGAGATCACCACTACCCCTTCCCCTTCCCCTTCCACTTGATGTGCTCGCCTTTCCCAACCCCAGCCCTAACCCTAACCCTAACCTATGTGTTCGCTTCTTGAGAAGCCATGAATATTCTCATCATTATCAGGCGCAGCAGCACTACGATCTCCGTGGATCCATCGCCTTACCCGTCTTTGAACGAGGCACTGCCACGTGCCTTGGCGTCCTCGACATTCTCATCACCAACCACCTCAACCTCACCAACAACTATCGCCCTCAGCTTGACAATGTCTGCAACGCTCTCGAGGCCGTCGATTTTAGGAGCTCTCATCAGAACTTGAACGCGAACTTTATCCCTCCGGCCATAAAGGTGTATGAGGAGCTATACCAAGCAGCACTAAATGAGATAGTGGAGGTGTTGACATCGGTGTGCAAGACGCAGAATCTTCCTCTAGGGCTGACATGGGCGCCGTGCATCCAACAAGGAAAGTGTGGGTGCGGGCACTCATCGGCAATGTGCGTGTCCACGGTGGATACAGCGTGCTATGTGGGGGATCTGGAAATGCTGGGCTTCCAGGAGGCGTGCTCAGAGTACCACCTCTTCAAGGGGCAAGGCATAGTTGGCACCGCCTTCACATCAGCCAAGCCCTGCTTCGCAATCGACATAACAGCCTTCAGCAGAGCAGAATACCCGCTTTCTCACCTCGCTAACATCTTTGGCTTGCATGCCGCCGTCGCCATCCCCCTCCGCAGCCTCTACACCGGATCCGCTGACTTCGTCTTGGAGTTCTTCCTGCCAAAGGACTGCCATGACACCGAGCAGCAGAAGCACATGCTCAATTCCCTCTCCATGCTCGTCCAGCAAGCTTGCCGGAGCTTGCACGTTGCCACCGACGACGACTTCACCCCTCCGATGCTCACACATCATCAGGCGCAAGCACAAATAATGGAAGAGGCGTGCTCGAAGGATCAGTCGTGGATAGCGCACATGATGGAGGCGCAGGTGCAGCAGAAGGGGAAAGGGGTGTGCGTGTCGTTGGAGTACCAAATGGAAGAGCCCAAAGAGGAGTTCAAGGTGACAACCAACTGGGACACCACCAACGACCAAGCCCATCACCAGCTCTTCTCCTCATCAGATTTCGGCCACATTGACGTGCTTGAGCACAGTAGGTCGAGGGCCAGCACTGCCGTGGACGGCGGGGAGGAGTCTTACGCCTTGGGTGGGCGGCGCTCCTCTTCTTCGGGTTCGGGCGGCAGGAAGTCAGGCGACAAGAGGCGAACCAAGGCTGAGAAAACTATCAGCCTGCCTGTCCTCAGACAGTACTTCGCCGGAAGCCTCAAAGACGCTGCCAAGAGCATTGGAGTGTGTCCCACGACTCTGAAAAGGATATGCAGGCAGCATGGGATAACAAGGTGGCCTTCCAGGAAAATAAAGAAGGTAGGGCACTCTTTGAAGAAACTTCAGCTTGTGATCGATTCGGTGCAGGGTGCAGAGGGTGCCATACAGATTGGCTCCTTCTATGCCAGCTTTCCCGAGTTGAGCTCCACGGATCTCTCTTCCCGTTCCGAATCATCACCATCCAAGAAAACCCACACTACAAATATTCCTCATCATCAGAATCCCAATAACAATACATTCTTGAAATCCCCACCCTCCTCTGCATGCAGCCAGACCTTAGATGTTGTCATGACAGAGAGCTCCGAGGCAGCATTGCTGCTCAACAGAGCTCACAGCGAGGCGGCAGAGTTGCTGCAGCATGCATCCCTCCAATCACAAGAGGATACAAAGCATAATAGTTTCATCAGCAGCAGATCCAATAATAAGAGCCATCATCATCACTCTCAAGACAGAGACAAAGAGAGGGGTGCTTTCAGGGTCAAAGCTACTTTTGGGGACGAGAAGATCCGGTTCAGCTTGCAGCCCAATTGGGGGTTCAGAGATCTACAGCTTGAGATGGCAAGGCGCTTCAACTTGAACGATATTAGCATCAGCAGCAGCAACATCGATCTCAAATACTTGGATGAAGATGGGGAGTGGGTTTTGTTGGCATGCGATGCAGATCTTGAGGAATGCAAGGACATACACAGATCATCTCAGAGCCGAACCATCCGCCTCTCACTTTTTCAAGCTTCCCCCCTCAATCATCTAGCAACAAACACTTTTGGCAATGGCACCACCAGCCCCTCCTAG 2598 0.5312 MEYGGIVHNENGGFGSLSESAVEAEVDLVDELLVEGCWVETTSAGGCYNWMHNPSDAVVAPQPQYLEMLQLQLQEESSSSSSDQESLVGKRWWIGPTRPGPSSSSSSSSSSSVKERLVVAVGYLKDYTKNNNLLIQIWVPPRRSPLPLPLPLPLDVLAFPNPSPNPNPNLCVRFLRSHEYSHHYQAQQHYDLRGSIALPVFERGTATCLGVLDILITNHLNLTNNYRPQLDNVCNALEAVDFRSSHQNLNANFIPPAIKVYEELYQAALNEIVEVLTSVCKTQNLPLGLTWAPCIQQGKCGCGHSSAMCVSTVDTACYVGDLEMLGFQEACSEYHLFKGQGIVGTAFTSAKPCFAIDITAFSRAEYPLSHLANIFGLHAAVAIPLRSLYTGSADFVLEFFLPKDCHDTEQQKHMLNSLSMLVQQACRSLHVATDDDFTPPMLTHHQAQAQIMEEACSKDQSWIAHMMEAQVQQKGKGVCVSLEYQMEEPKEEFKVTTNWDTTNDQAHHQLFSSSDFGHIDVLEHSRSRASTAVDGGEESYALGGRRSSSSGSGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSSTDLSSRSESSPSKKTHTTNIPHHQNPNNNTFLKSPPSSACSQTLDVVMTESSEAALLLNRAHSEAAELLQHASLQSQEDTKHNSFISSRSNNKSHHHHSQDRDKERGAFRVKATFGDEKIRFSLQPNWGFRDLQLEMARRFNLNDISISSSNIDLKYLDEDGEWVLLACDADLEECKDIHRSSQSRTIRLSLFQASPLNHLATNTFGNGTTSPS* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4524 865 SMART PB1_new 759 846 IPR000270 GO:0005515
Ahy13g4524 865 SUPERFAMILY CAD & PB1 domains 748 848 - -
Ahy13g4524 865 PANTHER PROTEIN NLP8 159 851 IPR045012 GO:0003700
Ahy13g4524 865 PANTHER PROTEIN NLP8 29 141 IPR045012 GO:0003700
Ahy13g4524 865 MobiDBLite consensus disorder prediction 725 758 - -
Ahy13g4524 865 ProSiteProfiles PB1 domain profile. 759 846 IPR000270 GO:0005515
Ahy13g4524 865 PANTHER PROTEIN NLP2 159 851 - -
Ahy13g4524 865 PANTHER PROTEIN NLP2 29 141 - -
Ahy13g4524 865 CDD PB1_NLP 760 845 IPR034891 -
Ahy13g4524 865 Pfam PB1 domain 760 845 IPR000270 GO:0005515
Ahy13g4524 865 MobiDBLite consensus disorder prediction 725 741 - -
Ahy13g4524 865 MobiDBLite consensus disorder prediction 653 688 - -
Ahy13g4524 865 Pfam RWP-RK domain 569 616 IPR003035 -
Ahy13g4524 865 Gene3D - 757 844 - -
Ahy13g4524 865 MobiDBLite consensus disorder prediction 526 566 - -
Ahy13g4524 865 ProSiteProfiles RWP-RK domain profile. 555 636 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4524 Ahy-Chr13 145533862 145537745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4524 11 865 NLP Transcription Factor Family AT4G35270 42.052 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ahy13g4524 PB1 9.30E-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4524 - - aip:107633985 1612.43