Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4489 ATGGCAACCGGTGATGATTACAATATTGATGATTTGTTTCGAGAAGCTCAAAGCAGATGGCTGAAGCCTGTGGAAGTGATGTACATTTTACAGAATCATGACAAGTACCAGTTCACACAAGAGCCCCCGCAACAGCCAACCAGTGGATCACTTTTTCTCTTTAACAGAAGAGTCCTGCGCTTCTTTCGTAGAGATGGCCATAACTGGCGCAAGAAGAAAGACGGAAGGACTGTCGGAGAGGCACACGAACGTCTTAAGGTTGGAACTGTCGAAGCCTTAAATTGTTACTATGCACATGGAGAGCAGAACCCTACTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTATAGAGAAACAAGTGAGGGAAGGTCCAGCTCTGGACCTGGCACACAATTGTCACCAAGTTCCTCTTCTGCATTTGGCCAGAGTCCTAGCTCATATTCTGCTCAGACACCATTGTCAACATCTGTACTTGGTGATCCATCTGAACCTAATCAGAGTTACTCTAGTTCTGGCACCGGAGAAGTTACCTCTGATGTATTCATCATGAATGATGGAATGAGTCACCTGGATGGGACATATGCAGACTCAGGAACTTCAACTGAAGTTGAGGTTACTCGAGCTTTGTTGCGCAGATTGGAGGAGCAGTTAAGTTTGAATGAAGACAGCATCAAAGAAATTGCTTCCTTCTACAGTGAGAAAGAAATTACAGATGAAGGTGATAAGTCTTATGAATTAATGGACCATACATACCGTGATGGAAATGAAAAGGATATATGGACAGAGGTGCTGGAATCATGCAAGTCGTCATCCACAGCCAGGTTGCCACAGAAAAATATATACATGCCAGCTGGAGAATACTTAAAGCAGGAAAATTCACCTTCTTTGTCAAGAAAGGAACCAATTGCCAATCAGGATGACGGTCACTGGCTAAACTTCAACAACAGTAATAACGCAGAAAACTCTGTTTTCTCACTACCTGAAGGTGATAGTGGAGTCAAATATCCTCCATATTCTTCTGTGCTAGGGGCACAAAAAGCTAATTCTGAGTACTATGCAACATTGTTTGCCCAAAGCCAAATTGGACCATCTCTGGATGCAGACTCAAGCTTGACTGTCTCACAAAAGCAGAAATTTTCTATTAAGGCAGTCTCCCCAGAATGGGGTTATACCACTGAGACTACTAAGATCATCATTGTTGGGTCTTTTCTGTGTCATCCCTCAGATTCTGCCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCCATTGAGATAATTCAGGACGGTGTAATCAGTTGTGAAGCTCCATCTCGCCTTTCTGGAAAGGTTAATCTCTGCATTACTTCTGGTAATAGGCAGTCCTGCAGTGAAGTCAGAGAGTTTGAGTATCGTAATAAGACAAGTATTTGCACTTACTGTAACTCATCGGCAACAGAAGCCAACAGAAGTCCAGAAGAGCTGCTGTTACTCGTTAGATTTGCACAGATGCTGCTTTCTGGTTCAACTACAAAGAATGATGACATAGAATCTGGAACTCATCTAGTAAAACAGAAAGCCGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGTGGGCAGTGGAACTTCATCTGGTATGGTCGATTGGCTTCTCGAAGAGCTTCTTAAGGATAAGCTGCAGCTGTGGCTTTCTTGCAGGTCCCAGGAGAAAGATGAAGTAACAGGCTGTTGTTTGTCGAAGAAAGAGCAGGGAATCATTCATATGGTAGCTGGATTGGGTTTTGAGTGGGCCTTGCACCCTATTCTCAGTTGTGGTGTGAATATAAATTTCCGTGACATTAGCGGATGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGAGAAAAAATGGTTGCTTCACTTATAGCTTGTGGTGCATCCGCTGGAGCAGTGACAGATCCAAGTGCACAAGATCCGAAAGGCAAAACTGCTGCATCTATTGCAGCAAGCAGTGGACATAAGGGACTGGCAGGATATCTTTCTGAGAGAGCTCTGACAAGCCATCTGTCATCCCTCACGATGCAAGAGACTGAGCTATCCAAAAGTTCTGCACAACTCGAAGCAGATTTAGCTGTTTGTAGTGTCTCCAAGGAAAATCTCGCCGCCGGTGAGGATCAGGCTCCACTTAAACATACCTTGGCTGCTGTCAGAAATGCAACTCAGGCCGCAGCACGTATACAATCTGCTTTTCGTTCGCATTCCTTCAGAAAGCGGAGGGCAAGAGAAGCTGCTGCTGCCACTGCTGGTGGTATCAACGCAGGTAGCATTGGTAACATTCCGGAGCTTTCTGCTCTGTCAAAACTTGCCTTTCGGAACTCACGGGATCACAATTCTGCTGCCTTATCTATTCAGAAGAAATTCCGAGGTTGGAAGGGTCGCAAAGATTTCTTAGAATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGAAAGCATTACAAGGTGATATGGGCAGTTGGAATCTTGGACAAGGTTGTCCTGCGATGGCGGAGAAAAGGAGCTGGCCTACGAGGTTTCCGACAGGAGATGGAGACTAGTGCCTTGGATGAAAGTGAAGATGAAGATATTCTCAAGCCTTACCGCAAACAGATGGTAGATGCAGAAATAAAAGAGGCTGTGTCGAGGGTGCTTTCCATGGTTGATTCTCCAGATGCTCGTCAGCAATATCATCGCATGCTTGAGAAGTATCGTCAAGCTAAGGCTGAACTTGCGGGTACGAGTGAGGAAGCATCATTGTCAACGTCCATTGCGGATGTTTTCAGTATGGAAGATGATATGTATCAGTTTCCTCAGGGCTAA 2871 0.4493 MATGDDYNIDDLFREAQSRWLKPVEVMYILQNHDKYQFTQEPPQQPTSGSLFLFNRRVLRFFRRDGHNWRKKKDGRTVGEAHERLKVGTVEALNCYYAHGEQNPTFQRRSYWMLDPAYEHIVLVHYRETSEGRSSSGPGTQLSPSSSSAFGQSPSSYSAQTPLSTSVLGDPSEPNQSYSSSGTGEVTSDVFIMNDGMSHLDGTYADSGTSTEVEVTRALLRRLEEQLSLNEDSIKEIASFYSEKEITDEGDKSYELMDHTYRDGNEKDIWTEVLESCKSSSTARLPQKNIYMPAGEYLKQENSPSLSRKEPIANQDDGHWLNFNNSNNAENSVFSLPEGDSGVKYPPYSSVLGAQKANSEYYATLFAQSQIGPSLDADSSLTVSQKQKFSIKAVSPEWGYTTETTKIIIVGSFLCHPSDSAWACMFGDVEVPIEIIQDGVISCEAPSRLSGKVNLCITSGNRQSCSEVREFEYRNKTSICTYCNSSATEANRSPEELLLLVRFAQMLLSGSTTKNDDIESGTHLVKQKADDDSWSHIIEALLVGSGTSSGMVDWLLEELLKDKLQLWLSCRSQEKDEVTGCCLSKKEQGIIHMVAGLGFEWALHPILSCGVNINFRDISGWTALHWAARFGREKMVASLIACGASAGAVTDPSAQDPKGKTAASIAASSGHKGLAGYLSERALTSHLSSLTMQETELSKSSAQLEADLAVCSVSKENLAAGEDQAPLKHTLAAVRNATQAAARIQSAFRSHSFRKRRAREAAAATAGGINAGSIGNIPELSALSKLAFRNSRDHNSAALSIQKKFRGWKGRKDFLELRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMETSALDESEDEDILKPYRKQMVDAEIKEAVSRVLSMVDSPDARQQYHRMLEKYRQAKAELAGTSEEASLSTSIADVFSMEDDMYQFPQG* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4489 956 ProSiteProfiles IQ motif profile. 817 842 IPR000048 GO:0005515
Ahy13g4489 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 840 IPR027417 -
Ahy13g4489 956 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 253 950 - -
Ahy13g4489 956 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Ahy13g4489 956 ProSiteProfiles IQ motif profile. 794 823 IPR000048 GO:0005515
Ahy13g4489 956 SUPERFAMILY E set domains 391 474 IPR014756 -
Ahy13g4489 956 Gene3D - 505 691 IPR036770 -
Ahy13g4489 956 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 253 950 - -
Ahy13g4489 956 CDD IPT 390 474 - -
Ahy13g4489 956 Pfam IQ calmodulin-binding motif 796 814 IPR000048 GO:0005515
Ahy13g4489 956 Pfam IQ calmodulin-binding motif 819 838 IPR000048 GO:0005515
Ahy13g4489 956 ProSiteProfiles IQ motif profile. 737 766 IPR000048 GO:0005515
Ahy13g4489 956 SMART CG_1_2 12 130 IPR005559 GO:0003677
Ahy13g4489 956 SMART ANK_2a 658 687 IPR002110 GO:0005515
Ahy13g4489 956 SMART ANK_2a 619 648 IPR002110 GO:0005515
Ahy13g4489 956 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 5 249 - -
Ahy13g4489 956 SUPERFAMILY Ankyrin repeat 587 681 IPR036770 -
Ahy13g4489 956 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Ahy13g4489 956 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 249 - -
Ahy13g4489 956 Pfam IPT/TIG domain 391 473 IPR002909 -
Ahy13g4489 956 Gene3D - 794 842 - -
Ahy13g4489 956 MobiDBLite consensus disorder prediction 129 186 - -
Ahy13g4489 956 Gene3D Immunoglobulins 383 478 IPR013783 -
Ahy13g4489 956 ProSiteProfiles Ankyrin repeat profile. 619 651 IPR002110 GO:0005515
Ahy13g4489 956 SMART iq_5 816 838 IPR000048 GO:0005515
Ahy13g4489 956 SMART iq_5 793 815 IPR000048 GO:0005515
Ahy13g4489 956 SMART iq_5 736 758 IPR000048 GO:0005515
Ahy13g4489 956 Pfam Ankyrin repeats (3 copies) 604 680 IPR002110 GO:0005515
Ahy13g4489 956 Coils Coil 913 933 - -
Ahy13g4489 956 ProSiteProfiles Ankyrin repeat region circular profile. 619 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4489 Ahy-Chr13 145109473 145114850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4489 270 954 CAMTA Transcription Factor Family AT1G67310 56.484 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Ahy13g4489 CG-1 5.50E-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4489 K21596 - gmx:100786880 1392.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4489 13 145109473 145114850 Ahy13g4489 13 145109473 145114850 ECH
Ahy13g4489 13 145109473 145114850 Ahy3g4206 3 142035990 142041379 hybridization