Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4482 ATGAACCGTTCCCTTATTCGTATTGCTATTGCTGTTGTTAACTTGTTATTGTATTCATATGCTTCTTCAGTCCCTGTAATATCACTGAATTTCTCAGCTCTTCCGATGGAGTGGAATGCAAAATCTCCCTCACAATGGGAGTGGGAGCACCTGTTCTTCTCCAATGCAAAAGTAACCGAAAACCCCAAATTACAACCACCACCAGATTGGAGTGGTGAAGCAAATGGAGAAACCAATGTTGGGTTGTTGGACAATTCTGGTGGTAGTGGTTGCTCTGAGTCTGAGCTCATGAACCCATCTTCGTCAAGAAGCTCGAAATCTGCTTCCATCAATTCATCTTCCAATAGGGATAGCAAAACATCTATCTTCACCTTAGAAAGTTCCCAAGATGATTCCAGTGGTAAAAAAGAAGAGCTGGTTGAAAACTCTCATTCGCATGAGCCCCCTCCTGGCTCTGGCGAACCGTTGCTTACTCTAAAGCTTGGTAAACGCTTGTACTTTGAAGATGTTTGTCCGGGAAGTGATGCCAAGAAGAACCAGTCTTCCTCAGGTGCTCCGATTCAAGCTGTGAGTAGTGGAAAGAAATCTAAGTCCAATGCTCAGAACATGCAATATCCATGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTCTTGTCAGCTAAAGATTATCATCGCAAACATAGAGTTTGTGAAAGTCATTCCAAGTCTCCAAAGGTGGTTATTGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGAAAACAAAAGAAGCTGCAGACGGCGTCTTTCAGATCACAATGCACGGCGCCGGAAACCTCATCCTGAAACTGTCCAGTTAAATCCATCAGATTTGACTCCCTCGCCTTTTGTTGGGAGGCAACAGATTAGCCCCTTCACTTATACAACGAGCGGAGCCGCGACCGCGAATACAGTTTGGCAAGACATGCGGCGGAGCAAGCAGCTCCCCCAGACGAAAGATTTTCTGTTGAAGGCTGTGAAAGGCAACAATGAGATACCAAGTATTGTGAGCATGGTGACAGAGGATGATTCCAAAGGCATTGCATTTGCAAGTGTAGAGGATTCAACTACGTGCTCTGATACTCAAGATTTCCAGAGTGCTCTCTCTCTTCTGTCAACCGAGTCTCATCAGCCTCAGCGCTTGCCTCTTGCTTCCTCGGAATACTGGCACACTGATCAACACCCATTGGCTTCCACCATGTGGCTCACCTACCCAACTTGCGACGACACCATCACCAACCGCTCTCAGGAATTTCAGCTCTTACGAGAACCTTATGATTCTGCTTTTAGTTATCACCACTTGGATTAA 1356 0.4594 MNRSLIRIAIAVVNLLLYSYASSVPVISLNFSALPMEWNAKSPSQWEWEHLFFSNAKVTENPKLQPPPDWSGEANGETNVGLLDNSGGSGCSESELMNPSSSRSSKSASINSSSNRDSKTSIFTLESSQDDSSGKKEELVENSHSHEPPPGSGEPLLTLKLGKRLYFEDVCPGSDAKKNQSSSGAPIQAVSSGKKSKSNAQNMQYPCCQVEGCGLDLLSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPHPETVQLNPSDLTPSPFVGRQQISPFTYTTSGAATANTVWQDMRRSKQLPQTKDFLLKAVKGNNEIPSIVSMVTEDDSKGIAFASVEDSTTCSDTQDFQSALSLLSTESHQPQRLPLASSEYWHTDQHPLASTMWLTYPTCDDTITNRSQEFQLLREPYDSAFSYHHLD* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4482 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 57 449 - -
Ahy13g4482 451 SUPERFAMILY SBT domain 206 287 IPR036893 GO:0003677|GO:0005634
Ahy13g4482 451 MobiDBLite consensus disorder prediction 175 198 - -
Ahy13g4482 451 ProSiteProfiles Zinc finger SBP-type profile. 205 282 IPR004333 GO:0003677
Ahy13g4482 451 MobiDBLite consensus disorder prediction 272 296 - -
Ahy13g4482 451 MobiDBLite consensus disorder prediction 59 157 - -
Ahy13g4482 451 Gene3D - 198 269 IPR036893 GO:0003677|GO:0005634
Ahy13g4482 451 MobiDBLite consensus disorder prediction 130 144 - -
Ahy13g4482 451 MobiDBLite consensus disorder prediction 174 198 - -
Ahy13g4482 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 57 449 IPR044817 GO:0003677
Ahy13g4482 451 MobiDBLite consensus disorder prediction 78 129 - -
Ahy13g4482 451 Pfam SBP domain 208 281 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4482 Ahy-Chr13 145043113 145046679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4482 36 284 SBP-box Gene Family AT5G43270 48.819 2.45e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy13g4482 SBP 3.60E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4482 - - ahf:112792599 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4482 13 145043113 145046679 Ahy13g4482 13 145043113 145046679 ECH