Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4464 ATGGATGTAGCTGAGTATGAGGAAAAACAGTTTTCAGCAAGTGATGCCAAGTTACATGGACAGATGTGCAAGGCGCTTTCTCTGATATATTGCAAAATATTGTCGGTATTTCCTTCCTTGGAAGCAGCTCGGCCTAGGAGCAAATCTGGAATTCAAGCATTATGTTCTCTGCACATGGCCATAGAGAAGACTAAAAACATTCTTCAGCACTGCACAGAATGTAGTAAACTTTACCTGGCTATAACTGCAGATTCTATTCTTCTAAAATTTGAGAGGGCTAAATGTTCTCTCAAAGATGGTCTTAAACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGATTCAGGAGATTGTCAATGAACTTGCAAGTGTGTCATTTGCACTTGATCCATCAGAGAAGAAAATTGGTGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAATGACTCTAATGACAGCAATGAACTTGAATCTTTTCATCAGGCTGCTAGCAGGCTTGGAATTACATCTTCTAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAGGTCATAGAAAGGGCTCGGGCAGAGGAAGACAAGCGGAAGGAATCAATTGTTGCTTATCTTTTGCATCTTATGAAGAAATACTCAAAATTATTTAGAAATGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCAGGGATCCATTGAGGATGGTGTTCCCGGTGTTCATTGTCAGGCCTTTGACAGACAGTTTTCTAAACTTGGTTCCTTTTGTTTTAAGCCAAATGATATGAAATCAGAGCACATGCCCCTTCCCCCTGAAGAGCTAAGGTGCCCAATATCTTTGCAACTTATGTACGATCCTGTAATCATTGCTTCTGGGCAAACTTACGAAAGGTTATGTATAGAAAAATGGTTTAGTGATGGCCACAGCACTTGCCCAAAGACCCAACAGAAGCTCACACATCTCTGTTTGACTCCTAATTACTGTGTGAAAGGTCTTGTTGCTAGTTGGTGTGAACAGAATGGAGTTAATATTCCCGAAGGCCCTCCTGAATCTCTTGATCTTAATTACTGGAGATTGGCATTCAATGAGTCTGAATCCACAAATTCAAGATCTGCAAACAGTGTCAGCTCTTGCAAGTTGAAGGGTATTAAAGTGGTTCCATTAGAAGAAAGGGGTACCTTTGAGGAAATTGGGGGAAATAGGGCTGAAAGTGTGTCTACACAAGAGGAAGATATTGCACAGTACTTAAGTCTTCTGGAAATCTTGACTGAGGCTAATAGTTTGAAGAGGAAATGTAAAGTGGTTGAACGATTAAGGCTGTTGCTGAAGGATGATGAAGAAGCAAGGATTTTTATGGGGGCTAATGGCTTCGTTGAAGTACTTTTGCGGTTTTTACAATCAGCTGTGCGTGAAGGAAATTTGATGGCTCAGGAGCATGGAGCAATGGCTCTTTTCAACCTGGCTGTAAATAATGACAGAAATAAGGAAATCATGTTGGCGGCAGGAGTATTATCATTGTTGGAGGAAATGGTTTCAAATACTCCTTCGTATGGTTGTGCAACTGCCTTATACGTGAATCTATCTTCCCTTGAAGAGGCCAAGCGTTTGATTGGTGTGAGTCAGGCTGTTCAGTTCTTAATCGAGCTTCTTCAAGCTGACACTGATATTCAATGCAAGCAGGATTCTCTCCATGCTCTCTATAATCTTTCCACTGTAACCTCCAACATTCCTTACCTCCTTTCATCCGGCATCGTTGGCGGCCTACAAATTCTTCTTGTGGACCAGGGCGATTGTAGTTGGATAGAAAAATGTATAGCTATTTTGATAAATTTGGCTTCTTCCCAAGATGGGATGGAGGAAATGTTATCGACTCCAGGAATTATAGGCGCATTAGCTTCAATATTGGACACAGGCGAGCTCCTAGAGCAGGAGCAAGCTGTCTCTTGCCTCCTGCTTCTATGCAATAGAAGTGAGAAATGTTGTGAGATGGTGCTACAAGAAGGTGTCATCCCTGCATTGGTTTCAATATCAGTGAATGGAAATCCAAGAGGGAGAGATAAAGCTCAGAAACTCCTGATGTTGTTTCGAGAGCAGCGGCAACGAGACCATCCGCCAGTGCAAGCTGACGCACATCATTGCCCTCCTGAAACTAGCGATTTGTCAATGCCGCCTTCTGAAATGAAGCCGCAATGCAAGTCAATGTCTAGAAGTAAGACAGGGAAAGCTTTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTGTCTACCAGTGTTAA 2301 0.4211 MDVAEYEEKQFSASDAKLHGQMCKALSLIYCKILSVFPSLEAARPRSKSGIQALCSLHMAIEKTKNILQHCTECSKLYLAITADSILLKFERAKCSLKDGLKRVEDIVPQSIGCQIQEIVNELASVSFALDPSEKKIGDDLIALLQQGRKFNDSNDSNELESFHQAASRLGITSSRAALAERRALKKVIERARAEEDKRKESIVAYLLHLMKKYSKLFRNEFSDDNDSQGSAPCSPTVQGSIEDGVPGVHCQAFDRQFSKLGSFCFKPNDMKSEHMPLPPEELRCPISLQLMYDPVIIASGQTYERLCIEKWFSDGHSTCPKTQQKLTHLCLTPNYCVKGLVASWCEQNGVNIPEGPPESLDLNYWRLAFNESESTNSRSANSVSSCKLKGIKVVPLEERGTFEEIGGNRAESVSTQEEDIAQYLSLLEILTEANSLKRKCKVVERLRLLLKDDEEARIFMGANGFVEVLLRFLQSAVREGNLMAQEHGAMALFNLAVNNDRNKEIMLAAGVLSLLEEMVSNTPSYGCATALYVNLSSLEEAKRLIGVSQAVQFLIELLQADTDIQCKQDSLHALYNLSTVTSNIPYLLSSGIVGGLQILLVDQGDCSWIEKCIAILINLASSQDGMEEMLSTPGIIGALASILDTGELLEQEQAVSCLLLLCNRSEKCCEMVLQEGVIPALVSISVNGNPRGRDKAQKLLMLFREQRQRDHPPVQADAHHCPPETSDLSMPPSEMKPQCKSMSRSKTGKAFSFFWKSKSYSVYQC* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4464 766 SUPERFAMILY RING/U-box 273 354 - -
Ahy13g4464 766 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Ahy13g4464 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Ahy13g4464 766 CDD RING-Ubox_PUB 283 325 IPR045210 -
Ahy13g4464 766 PANTHER U BOX DOMAIN-CONTAINING 1 758 - -
Ahy13g4464 766 Coils Coil 175 195 - -
Ahy13g4464 766 SUPERFAMILY ARM repeat 427 704 IPR016024 -
Ahy13g4464 766 MobiDBLite consensus disorder prediction 712 742 - -
Ahy13g4464 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 758 - -
Ahy13g4464 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Ahy13g4464 766 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Ahy13g4464 766 Gene3D - 531 705 IPR011989 -
Ahy13g4464 766 Gene3D - 414 530 IPR011989 -
Ahy13g4464 766 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4464 Ahy-Chr13 144753016 144757620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4464 1 765 U-box Gene Family AT1G24330 65.128 0.0 1015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4464 13 144753016 144757620 Ahy3g4184 3 141768570 141773161 hybridization
Ahy20g0979 20 14162523 14168379 Ahy13g4464 13 144753016 144757620 PCT
Ahy13g4464 13 144753016 144757620 Ahy20g0979 20 14162523 14168379 PCT