Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4456 ATGGACTCCGATTCTGACTCTGACGGATCCCATGTCTCTGCAACCCCTCCACGACGAGCAACTCCATCACCGCCGCCACCACAACCTCCGCCGCCGCCACAACCACCTCGTGTTCCTTCCGGAAAATCTAGAATCAGAACCAAAACCTCGAGCTCCAAGAAGCGCCCTTCTGCACCCGATAAAACCCAATCCAAACACGATCCGCTACCCGAACCAACCCACCAACTCCAAGACTCTTTCTCCCTCCCGACCGCTCTACCGTTTCAAATTCGTCGGTCCTCCGAGTGTGACCCCACACCCCCTTCCACTTCCCAGCCCCTCGAAACCCTCCCGGCGGGGTTCTTCTCCAAATCCGCTTCCTTCTCGAAGATCCGAAGACATTCTATAAGTTTTGAAGCTTCTGGAAACGAACCGCTACTCAATTCTACGTCCAATCTGGGCACCAATGTTGGACTTGATTATGCTCGTGCTTTCCCCGAAGGGGAAAAGGGGAAATGTGGAAGGAGAGAAGAAGAAGGACTCGGGTTTGGTTCCAGAGATAAGAGGAAATTTGGAAAGATAGAAGAAGAGGAAGAAAGAGGAGGACTTGGAGCTGTTTCTAGAGAAAAGGAGAACTTTGGAAAGAGAGAAGAAGCAGAAGACAGATTTGGAGTTGGTTCTAGAGTAAAGGGGACATCCGGGAAGAGGCAGCATCCTAACCTGATAGGGGCAAATGCACCATTGCCAGCCGTGAAGCTGCGAAAATGTGGTGGGGAAGGGAACTTTGTGAAATTGAACTTGAGTGGTGGTGGTAAGAGGAGGAAGTTTATGAACAAGGGGTACAAGAAAAGTGGGAGATTTTCTGGCGGTAGAAGGTACACAAGAAGAAGTAGAGGTAAAGTGGGACGTCAAGGGAAGGAGGATCAAGAGGAACTTGGTTTTGATGATGAAGAAGGGTTGGTTACAGAGAGTGGACAAAAGAAGCAAAAGCGGACTTGCAGAGCTAGTGAGGTTCAGTTGAAATTGGTGGACGAGGCAGTGTCTGCTGCTCAAGCTGAGCCTTCGGATGAGAATTTGGTGAACTTGCTGAGCTTGGTTTATGGCTATGATAGTTTTCGAGATGGGCAGCTGGAGGCAATCAAGATGGTTCTTACCGGGAAGTCTACCATGCTTATTTTGCCAACTGGTGCAGGGAAGTCACTCTGCTATCAGCTGCCTGCCTTGATTTTGCCTGGGATTACCCTAGTTGTCAGTCCATTGGTGGCCTTGATGATTGATCAGCTAAGGCAACTGCCCCCTGTGATTAGGGGTGGTTGTTTAAGCAGCAGTCAGACATCTGAGGAAGCAGCTGAAACACTGAACCAGCTTAGACAAGGTGCAGTGAAGGTGCTTTTTGTTTCCCCAGAGCGCTTCCTAAATGAGGAGTTTCTGTCTGTTATTTCTGGTATGTCAGGCATCTCACTTCTTGTTGTTGACGAAGCACACTGTATTTCTGAATGGTCTCACAATTTCCGACCATCATTCATGAGACTTAGAGCATCTTTGCTCCGTAAAAGGCTTAACATAGGTACTATTCTTGCAATGACAGCAACTGCTACAAACACAACTTTAGATGCCATCATGTCTGCTCTAAATATTCCTTGCACAAATCTTATTCAAAAGGCACAACTAAGGGACAATTTTCATTTATCGGTGTCTTTGCTGAAAAATAGAATGAAAGACCTTCTGGTTCTCATGAAGTCTTCTCCTTTTGCCGAAGTTCAAAGCATTATCATATACTGCAAATTTCAGTCTGAAACTGATATGATTAGCCGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATGGTGGTATGAGTTCAAAGGAACGCAACTATGTCCAAGAGTTGTTTACCTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTGGATAAAAGTGATGTTGGAGCTGTAATTCATTATAGTCTCCCTAAAAGTCTGGAGGAGTATGTGCAGGAGATAGGCCGTGCTGGAAGGGATGGGAGGTTGTCCTATTGTCACCTATTCTATGATGATGAAACATATTTCAAACTTCGCAGTCTAATGTACAGTGAAGGAGTAGATGAATACACAGTGAACAAATTTCTGCATGAAGTGTTTCCTGCTGAGAAGAGCTCCTGTGGGAGAATATGTTCGTTAATTAAAGAATCTTCTTCACGCAAGTTTGATATGAAAGAAGAGGTGATGCTAACAATTTTGACACGCTTGGAGTTGGGAGATGTGAAGTACTTGTATTTACTTCCACAGATAAATTCAACTTGCAATTTGACATTTCATAAGACTCCCCCACCTATGCTTGCCCAAAGGAATTCTGCTGTTGCTGTTATTCTGAAGAGATCTGAATATAAGCAAGGGCTGTATGTTTTTGATATTCCATCCGTGGCAAATGACGTGGGGGTTACAGCAGTTGAGTTAACAAATCAGTTGTACAATCTCAAGTTAACGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAAGATTGTTCAAGTCCCGACGGACTTTTTCTCGCTATCAACAGCTGTTACCCAATGGTTATCAGATGTTGAAAGTTGTAAGGTACAAAAGATAGATGTAATGCTTAATGCTGCAAATTTTGCCATAAATTTATGTGACAAGATGCATGGTTGCAGTGATAACAATCACACACCATGCTTGCAAACGAAAATATTGGATTACTTTGCTGGAGTTGATGATAACAATGATTCCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCTGATATTAAGGTCTTTCTTCAGAGCAATTCACAAGCAAAATTTACACCAAGAGCTTTGGCCAGGATAATGCACGGAATTGCAAGCCCGGCATATCCTTCTACCATTTGGTGTAGAACCCATTTTTGGGGAAGGTATACACATATAGACTTCAAGGTGGTGATGGAAGCAGCAAAGGCAGAACTGAAGAATTTGGTTGGAAAAGATACGCTCTAG 3012 0.4432 MDSDSDSDGSHVSATPPRRATPSPPPPQPPPPPQPPRVPSGKSRIRTKTSSSKKRPSAPDKTQSKHDPLPEPTHQLQDSFSLPTALPFQIRRSSECDPTPPSTSQPLETLPAGFFSKSASFSKIRRHSISFEASGNEPLLNSTSNLGTNVGLDYARAFPEGEKGKCGRREEEGLGFGSRDKRKFGKIEEEEERGGLGAVSREKENFGKREEAEDRFGVGSRVKGTSGKRQHPNLIGANAPLPAVKLRKCGGEGNFVKLNLSGGGKRRKFMNKGYKKSGRFSGGRRYTRRSRGKVGRQGKEDQEELGFDDEEGLVTESGQKKQKRTCRASEVQLKLVDEAVSAAQAEPSDENLVNLLSLVYGYDSFRDGQLEAIKMVLTGKSTMLILPTGAGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPPVIRGGCLSSSQTSEEAAETLNQLRQGAVKVLFVSPERFLNEEFLSVISGMSGISLLVVDEAHCISEWSHNFRPSFMRLRASLLRKRLNIGTILAMTATATNTTLDAIMSALNIPCTNLIQKAQLRDNFHLSVSLLKNRMKDLLVLMKSSPFAEVQSIIIYCKFQSETDMISRYLNDNNISAKSYHGGMSSKERNYVQELFTSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPKSLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLMYSEGVDEYTVNKFLHEVFPAEKSSCGRICSLIKESSSRKFDMKEEVMLTILTRLELGDVKYLYLLPQINSTCNLTFHKTPPPMLAQRNSAVAVILKRSEYKQGLYVFDIPSVANDVGVTAVELTNQLYNLKLTGEITYEMKDLAYCYKIVQVPTDFFSLSTAVTQWLSDVESCKVQKIDVMLNAANFAINLCDKMHGCSDNNHTPCLQTKILDYFAGVDDNNDSCKKIGQSSPFLRADIKVFLQSNSQAKFTPRALARIMHGIASPAYPSTIWCRTHFWGRYTHIDFKVVMEAAKAELKNLVGKDTL* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4456 1003 SMART ultradead3 361 557 IPR014001 -
Ahy13g4456 1003 Gene3D - 332 542 IPR027417 -
Ahy13g4456 1003 Gene3D - 545 743 IPR027417 -
Ahy13g4456 1003 MobiDBLite consensus disorder prediction 1 111 - -
Ahy13g4456 1003 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 564 721 IPR001650 -
Ahy13g4456 1003 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 373 543 IPR014001 -
Ahy13g4456 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 693 IPR027417 -
Ahy13g4456 1003 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 355 724 IPR004589 GO:0004386|GO:0006310
Ahy13g4456 1003 MobiDBLite consensus disorder prediction 185 218 - -
Ahy13g4456 1003 MobiDBLite consensus disorder prediction 53 72 - -
Ahy13g4456 1003 Pfam Helicase conserved C-terminal domain 580 674 IPR001650 -
Ahy13g4456 1003 SMART helicmild6 594 675 IPR001650 -
Ahy13g4456 1003 MobiDBLite consensus disorder prediction 95 111 - -
Ahy13g4456 1003 CDD DEXHc_RecQ4-like 353 546 - -
Ahy13g4456 1003 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 480 489 IPR002464 -
Ahy13g4456 1003 MobiDBLite consensus disorder prediction 268 292 - -
Ahy13g4456 1003 MobiDBLite consensus disorder prediction 18 39 - -
Ahy13g4456 1003 PANTHER ATP-DEPENDENT DNA HELICASE Q4 62 927 - -
Ahy13g4456 1003 MobiDBLite consensus disorder prediction 267 307 - -
Ahy13g4456 1003 Pfam DEAD/DEAH box helicase 367 529 IPR011545 GO:0003676|GO:0005524
Ahy13g4456 1003 PANTHER DNA HELICASE RECQ FAMILY MEMBER 62 927 - -
Ahy13g4456 1003 CDD SF2_C_RecQ 551 684 - -
Ahy13g4456 1003 MobiDBLite consensus disorder prediction 185 236 - -
Ahy13g4456 1003 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4456 Ahy-Chr13 144683347 144688963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4456 584 707 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 2.22e-15 77.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4456 13 144683347 144688963 Ahy3g4174 3 141686977 141692509 hybridization