Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4440 ATGGATAATAATGGTTGCTTGCCATGTACACGTCGTGAAGGTTTTCCAGCTGGACTGAGAGTTCTGGTTGTTGATGATGATCCAACATGGCTTAAGATCCTTGAAAAGATGCTCAAGAAGTGCTCTTACCAAGTGACTACATGTTGTTTGGCAACGGAGGCTCTGAAGAAGCTTCGAGAGAGGAAAGATGCATTCGACATAGTGATCAGCGATGTAAACATGCCTGACATGAATGGATTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTGCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTAATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAGCATGTCTTGAGAAAAAGGATTCATGAAGGGAGAGAGTTTGAAAGCCTAGAGGGCTTTGATTTTGAGGGCATTCATCACTTGATGAGAAATGGACAAGATCAATGTTGTGATGATGTGAGCCTCTTTGCATTAGAAGATTGTATCAGTTCAACAAGGAAAAGGAAAGATGCAGATAACAAACACGACGAAAGAGAATTCGGAGATTCTTCTTCAACCAAGAAAGCTAGAGTGGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCCAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTACCATGGCTTACCAGAGAAAATGTTGCTAGTCATTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAGAAGCAGAGAGATCAGAAGAAATGCTCCTCAAGTGGAATAAAGAATCCGGATTTGAATCCGAAAGATCCCGGAAGCTCTAGTATTAAGAACTCTATGAACAAGCAACAAAATGTAGTTTCAATTGACGGCTTCAGATGTCCAAATAATGGATTAGTGCAACTTCATGAATCTGATTTCACTGTGTCAGAGCTTAATAAAACAGAACAAAGAAGAGCACTAGCTACTAATAACATTATTCCGGATCCAAACATGACAAAGGTTTCACAGATAGTCCTTAATCAAACCTTTTCACCTCTCAATTCAGAAGGAAACATTGAAGTATTTGATTGCACCATACCAACACAGTACACTTGGAATCAAGTCCCCAAAAGGAAACTCCAAGATGATCCTAAATCACAATCAATTGCTTCAATGGTATCCAGTCCCTCTGCTGCAAGCTCAATAGCTTCTTCTGCAGTTGACAACATTATTCCGGTTCAGTCCAAAAGCCTTATGGTGAATGATCAATCTTCAGTCACTTCAAATCCGGGCTTGAAAACACAGGAATTTGATGCCAGTCTCATTCCTGAACTGGAATTTTACCAGCAAAACCTACTCTGGGGTGGCGAGGCGGCTTTTTCGCCTTTGGAGGAGGACTTGAATTTCTTTTTGCTACAAAGTGAATGCTACAATGACATGAACTTTGGTATGCACAACATAGACACGTCAGACTATTATTACGATCCAGGGCTTATTGCTGATGTTCCAAACCATTTATTATACGATTCAGCAGATTATTCAGTAGTAGATCAAAGTCTATTCATAGCATGA 1605 0.4025 MDNNGCLPCTRREGFPAGLRVLVVDDDPTWLKILEKMLKKCSYQVTTCCLATEALKKLRERKDAFDIVISDVNMPDMNGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEGREFESLEGFDFEGIHHLMRNGQDQCCDDVSLFALEDCISSTRKRKDADNKHDEREFGDSSSTKKARVVWSVDLHQKFVQAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKQRDQKKCSSSGIKNPDLNPKDPGSSSIKNSMNKQQNVVSIDGFRCPNNGLVQLHESDFTVSELNKTEQRRALATNNIIPDPNMTKVSQIVLNQTFSPLNSEGNIEVFDCTIPTQYTWNQVPKRKLQDDPKSQSIASMVSSPSAASSIASSAVDNIIPVQSKSLMVNDQSSVTSNPGLKTQEFDASLIPELEFYQQNLLWGGEAAFSPLEEDLNFFLLQSECYNDMNFGMHNIDTSDYYYDPGLIADVPNHLLYDSADYSVVDQSLFIA* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4440 534 SMART REC_2 19 131 IPR001789 GO:0000160
Ahy13g4440 534 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Ahy13g4440 534 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Ahy13g4440 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 410 506 - -
Ahy13g4440 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 396 - -
Ahy13g4440 534 Pfam Response regulator receiver domain 21 130 IPR001789 GO:0000160
Ahy13g4440 534 Gene3D - 202 270 - -
Ahy13g4440 534 SUPERFAMILY Homeodomain-like 204 263 IPR009057 -
Ahy13g4440 534 SUPERFAMILY CheY-like 18 143 IPR011006 -
Ahy13g4440 534 CDD REC_typeB_ARR-like 21 135 - -
Ahy13g4440 534 PIRSF RR_ARR_type-B 2 501 IPR017053 GO:0003677|GO:0003700|GO:0009736
Ahy13g4440 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 410 506 IPR045279 GO:0009736
Ahy13g4440 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 396 IPR045279 GO:0009736
Ahy13g4440 534 Gene3D - 19 167 - -
Ahy13g4440 534 MobiDBLite consensus disorder prediction 276 297 - -
Ahy13g4440 534 MobiDBLite consensus disorder prediction 270 297 - -
Ahy13g4440 534 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4440 Ahy-Chr13 144495392 144498212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4440 15 271 Response Regulator Gene Family AT2G25180 54.545 1.45e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ahy13g4440 Response_reg 1.60E-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4440 - K14491 gmx:100806394 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1029 20 15453851 15457470 Ahy13g4440 13 144495392 144498212 PCT
Ahy10g0741 10 8827616 8830743 Ahy13g4440 13 144495392 144498212 PCT
Ahy13g4440 13 144495392 144498212 Ahy20g1029 20 15453851 15457470 PCT
Ahy13g4440 13 144495392 144498212 Ahy10g0741 10 8827616 8830743 PCT