Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4439 ATGGTGCAAATACAATCCAATAGTTCTTTCAGAGAATCTCTCAAGGCTCTTGAAGATGATATCCAACATGCCAACACACTGGCATCAGCACTCCCTAGAGATTATAATGGGAGCTATATCCAAATGAAATTATGTTACAGCCCTTTTGCTCCTCTTTTCTTGTCATTGATTGAGTGGTTGGATTTTAGTTGCACAGATGATATTCCCCATTGTTTGGGATTACTCCACATTCTTATATCCAATGTATACATTGATGGAATGCCATCTATTTCCTCAAAAGAAAGGATAGCCTCTCTAAGAGAATTCTATGCTGTAATATACCCTTCGCTCCTATTACTCGAAGGCGAGTTCAATGTGTCCAGAATCAGAGACCACAGAAGCAATTGCAGCCAAATTGTGAGCAGAAAAAGGCTTGAAAAGTTTCTTGATGAAGACCAAGAGGGAGATGATGAATGTGACATATGCATGGAGAAGAGCAGGAAGATGGTGCTTCCTAATTGTGTGCATTCCTTGTGCATTAGCTGCTTCCATGATTGGTATTTGAGATCAGAATCATGTCCATTTTGCCGTGGAAGCCTCAAAAGGGTTAGTTCTACAGATTTATGGGAGGTTATTGGAGACAGTGATGTAATTGACCGAGCTACACTTGCAATGGATAATATAAGACGTTTCTACCTTTTCATGGAAACTTTGACACTTAATATCCCTGATGCACATGTCTATGCATTTAACTACATGTTATGA 744 0.3938 MVQIQSNSSFRESLKALEDDIQHANTLASALPRDYNGSYIQMKLCYSPFAPLFLSLIEWLDFSCTDDIPHCLGLLHILISNVYIDGMPSISSKERIASLREFYAVIYPSLLLLEGEFNVSRIRDHRSNCSQIVSRKRLEKFLDEDQEGDDECDICMEKSRKMVLPNCVHSLCISCFHDWYLRSESCPFCRGSLKRVSSTDLWEVIGDSDVIDRATLAMDNIRRFYLFMETLTLNIPDAHVYAFNYML* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4439 247 SUPERFAMILY RING/U-box 139 195 - -
Ahy13g4439 247 PANTHER RING FINGER PROTEIN 41, 151 6 247 - -
Ahy13g4439 247 Pfam Zinc finger, C3HC4 type (RING finger) 149 195 - -
Ahy13g4439 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 201 IPR013083 -
Ahy13g4439 247 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 6 247 - -
Ahy13g4439 247 SMART ring_2 152 189 IPR001841 -
Ahy13g4439 247 ProSiteProfiles Zinc finger RING-type profile. 152 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4439 Ahy-Chr13 144489566 144491489 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4439 143 194 C3H Transcription Factor Family AT5G01960 34.615 1.63e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4439 - - adu:107481966 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4439 13 144489566 144491489 Ahy13g4439 13 144489566 144491489 ECH