Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4427 ATGACCCCTCGGATATATAATATATGTAGCTGTTACATTATACCCTGCACAAGAATCAATCTGATAGCTAAAAAGATGAATCAAAAGCAGCTTGAGCCACTACCTTTGCTAAGCAGCTTCCTTGGTTCTTCAACTTGTTCATCATCAGAACAAAATCAAAATCTGAAAGAAGATGTGACAGTGGCCTTGCACATTGGGCTCCCTGACAATTCCCATGATAATCATAATGTAGAACCTCTCCAAGCTCCAAATAATTACTGGATACCAACTGAAGAACAGATTATAATTGGTTTCAGCCACTTCTCTTGTCCTGTATGCCCAAAAACCTTCAACCGCTACAACAATCTTCAGATGCATATGTGGGGACATGGGTCAGAATACAGAAGAGGGCCAGAGTCACTGAAAAGAACACATCCAAGGCCATTGTTGGAGATAGCATGCTACTGCTGCAAAGGAGGGTGCAAGAACAACATAGAGCACCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACACTGCAAACACACTATAAGAGGAAGCATGGACCCAAACCCTTCTCATGCCGCAAGTGTTCAAAGAATCTCGCTGTCAAAGGTGACTGGAGAACTCATGAGAAGAACTGCGGCAAACGCTGGCTTTGTCTTTGTGGCTCTGACTTCAAACACAAGAGGTCTCTTAAGGATCATATCAAAGCTTTTGGCTTTGGTCATACTCCCTTCTCTTCTTCTTCTACTTCTTCTTCTCATTGA 747 0.4284 MTPRIYNICSCYIIPCTRINLIAKKMNQKQLEPLPLLSSFLGSSTCSSSEQNQNLKEDVTVALHIGLPDNSHDNHNVEPLQAPNNYWIPTEEQIIIGFSHFSCPVCPKTFNRYNNLQMHMWGHGSEYRRGPESLKRTHPRPLLEIACYCCKGGCKNNIEHPRAKPLKDFRTLQTHYKRKHGPKPFSCRKCSKNLAVKGDWRTHEKNCGKRWLCLCGSDFKHKRSLKDHIKAFGFGHTPFSSSSTSSSH* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4427 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Ahy13g4427 248 Pfam Zinc finger, C2H2 type 101 120 IPR013087 -
Ahy13g4427 248 SUPERFAMILY beta-beta-alpha zinc fingers 167 205 IPR036236 -
Ahy13g4427 248 SUPERFAMILY beta-beta-alpha zinc fingers 96 124 IPR036236 -
Ahy13g4427 248 Gene3D Classic Zinc Finger 100 123 - -
Ahy13g4427 248 PANTHER ZINC FINGER PROTEIN WIP2 28 244 IPR043584 GO:0003700|GO:0010468
Ahy13g4427 248 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Ahy13g4427 248 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 28 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4427 Ahy-Chr13 144292743 144294299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4427 59 242 C2H2 Transcription Factor Family AT1G34790 65.686 4.39e-95 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy13g4427 zf-C2H2 0.00028 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4427 - - gmx:547675 369.392