Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4353 ATGTCTGTGGCTGCTCCAAGTTCCCTTTTGAAGGTGGAGGAGATACAAGGAAGAGGGAGGGGAATGGTTGCATCACAACCTCTTAAAGCCGGCCAAATTGTCCTTAGAGATTCTCCTATCCTGCTCTATTCTGCTTTGCCATTGATCCCGCAGTCTTTATCTTCGTCCTCCTCTACCCTAGCCTCCTCCTTCTGTGATCACTGCTTTAGAACCTTACCATCCTCTTTACAGGGCGATTCTTCATCTTCCGCAGTTTTGTGCCCTTCATGTAGACATTATCGTTTTTGCAGCTCTAATTGTCTCTCAAAGGCATTGAATTCATCTCATTCTTCTTGGGTATGTCAAGCATTGTCTCACTTCCAAGCCAACTCTCCTCTTCTTGGACATCCCCTTGAGCTTCAAGTCCAGGCTCAATTTCTCATTGCTGCGTACAATCTTGCCAATATCTCCCCCTCAGACTTTCAAATCTTGCTTTCTCTTCATGGTTCTCCTGATGACGCTACAATTTCTGCAGCTCAATTCCTACACCCTCTTATTTCATCCCTCTGCTCAATTGCTCCCATTGGTCTTCAGAATGTATTTTCTTTGGAACTCACCTCTGCGCTTCTGGCCAAGGACAAGCACAATGCCTTTGGCTTAATGCAGCCTGTTTCTGTTGATGATGGCCAGAGGTCTGTTAGAGCTTATGGTATATACCCCTATGCCTCCTTTTTTAACCACGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGATAGTAATCCACCAGATGGCAGTAATAATACTGACATTATTGTTAGGATGATTCATGATGTTCCTCAAGGCAGGGAGATCTGTTTGAGCTATTTCCCTGTCAATGAAAACTATGCTAGCAGGCAGAAGAGATTGATGGAAGACTATGGCTTCACCTGTAATTGTGATCGGTGTAATGTCGAATCAAATTGGTCAGATAATGATGACACTATCGAAGAAGATAATGCAGAGGATGGAGAAGAGGTTATGGATGAGGAGGACCAATATGAAAACATGGCAGCGTCAGATACAGACAATAATAATGATTTCCCACACGCATATTTCTTTTTAAGGTACATGTGTGATAGACCAAATTGCGGGGGAACTTTGGCTCCTCTACCCCCACAAGTTGATAGTCCATCTAATGTCATGGAATGTAATGTCTGTGGCAAATTGAAAAGTGATGATGAGCAAGATGAAGCTCCCATGGAGGACTGA 1233 0.4371 MSVAAPSSLLKVEEIQGRGRGMVASQPLKAGQIVLRDSPILLYSALPLIPQSLSSSSSTLASSFCDHCFRTLPSSLQGDSSSSAVLCPSCRHYRFCSSNCLSKALNSSHSSWVCQALSHFQANSPLLGHPLELQVQAQFLIAAYNLANISPSDFQILLSLHGSPDDATISAAQFLHPLISSLCSIAPIGLQNVFSLELTSALLAKDKHNAFGLMQPVSVDDGQRSVRAYGIYPYASFFNHDCLPNACRFDYVDSNPPDGSNNTDIIVRMIHDVPQGREICLSYFPVNENYASRQKRLMEDYGFTCNCDRCNVESNWSDNDDTIEEDNAEDGEEVMDEEDQYENMAASDTDNNNDFPHAYFFLRYMCDRPNCGGTLAPLPPQVDSPSNVMECNVCGKLKSDDEQDEAPMED* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4353 410 Pfam SET domain 19 283 IPR001214 GO:0005515
Ahy13g4353 410 Gene3D - 64 123 - -
Ahy13g4353 410 SUPERFAMILY SET domain 8 306 IPR046341 -
Ahy13g4353 410 Gene3D - 124 210 - -
Ahy13g4353 410 Gene3D SET domain 21 310 IPR046341 -
Ahy13g4353 410 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 2 405 IPR044238 -
Ahy13g4353 410 ProSiteProfiles SET domain profile. 8 284 IPR001214 GO:0005515
Ahy13g4353 410 CDD SET_SMYD 208 310 - -
Ahy13g4353 410 SMART set_7 8 290 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4353 Ahy-Chr13 143196149 143199545 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ahy13g4353 SET 4.00E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4353 - - gmx:100783406 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4353 13 143196149 143199545 Ahy3g4076 3 140200171 140203661 hybridization