Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4313 ATGGCTTCCTTCACAATTGGTCCTCATCATCGCCATTTGTCACATGACTCTGATGAGGTTCGCCCTCCTACTCGACAATCTGCTTCATCGAAAGTACAATGCCGAGTTTGTGGTGATGAGATTGGAAATAAGGAAGATGGAGGGTTATTTGTGGCATGTTATGTGTGTGGCTTCCCTGTTTGTCGACCCTGCTATGAGTATGAGAGAAGTGAAGGCACACAGTGCTGTCCTCAGTGCAACACTCGCTATAAGCGTCACAAAGGATCTCCTAGAGTAGTAGGAGATGAAGAGGAGAACTTTGATGCAGATGATTTTGATGATGAATTTCAGATTAAGACTGGCCATGATCATGATCATGATCATGATGATGTTAATCATGCGGAAGATAAAGACAAGAAGGAACAGCAGTGGCATCCCAATGCTCAAGCTTTTTCTTCAGCAGGAAGTGTTACCGGTAAAGACATTGAAGGGGACAAAGAATTCTACAGCAATGCAGAGTGGGAAGAAAGGGTAGAGAAATGGAAAGCCAGACAAGAAAAGAAAGGCCTCCTAAACAAAGAAGAAGGGAAAGACGATCAAGATGAAGAAGAAGATGAGTACCTTTTGGCTGAAGCTAGACAACCATTGTGGCGTAAAGTTCCAATATCTTCAAGCCTGATCAACCCATACCGGATAGTGATTGTGATGAGGCTGGTGATTCTGGCTTTCTTCTTGCACTTCCGCATCATGACTCCAGCACATGACGCTTTCCCACTGTGGTTAACATCTGTGATATGTGAGATATGGTTTGCATTCTCATGGATCCTTGACCAGTTCCCTAAATGGTTCCCCATCACGCGCGAGACTTACTTGGACCGCTTGTCCATAAGGTTCGAGCGCGAAGGGGAACCAAACAAGCTTTCCCCTGTTGATGTCTTTGTCAGTACTGTGGACCCTTTGAAGGAACCTCCAATCATAACAGCCAACACCGTCCTTTCCATCCTCTCCGTCGATTACCCGGTCGAAAAGGTTTCCTGCTATGTATCAGATGATGGTGCTTCTATGCTTCTCTTTGACACACTTTCGGAAACCTCTGAGTTTGCAAGAAGATGGGTTCCATTTTGCAAGAAGTATAATATTGAGCCAAGAGCTCCTGAGTTCTATTTCTCTCAGAAAATCGATTACTTGAAAGACAAGGTACATCCTATGTTTGTCAAGGAACGCAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTGAAGATTAATGCTTTGGTGGCAAAGGCTCAGAAGAAACCAGAGGAAGGTTGGGTAATGCAGGATGGAACACCATGGCCTGGGAATAACACTCGTGATCATCCAGGAATGATTCAGGTGTACTTGGGAAGTGCTGGTGCACTTGACGTGGAAGGCAAGGAACTGCCGCGACTTGTGTATATTTCGCGTGAAAAACGTCCTGGCTATCAACATCACAAAAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCTTTCATGTTGAATTTGGATTGTGACCACTACATAAACAATAGCAAGGCTATAAGAGAAGCTATGTGCTTCTTAATGGATCCTCAGCTTGGGAAGAAGCTCTGCTATGTCCAATTCCCACAAAGGTTCGATGGTATTGATCGACATGATAGATATGCCAATCGCAACATTGTATTCTTCGATATCAATATGAAAGGCCTAGATGGGATCCAAGGTCCAGTGTATGTTGGTACTGGAACTGTTTTCAATAGGCAGGCATTGTACGGATATGATCCACCAGTGTCCGAGAAAAGGCCAAAGATGACGTGTGATTGTTGGCCTTCCTGGTGCTGCTGCTGTTGTGGTGGTTCAAGGAAATCAAAGTCAAAGAAGAAATCAGGTGGAGGAGGTCTTTTCAGTAAATTGTACAAGAAGAAAAAGATGAAGGGGAAGAACTATGTTAGAAAAGGGTCTGAGCTGATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTTTGATGAGCTAGAGAAATCATCTCTAATGTCTCAGAAACAGTTTGAGAAGCGATTCGGGCAGTCGCCTGTTTTCATTGCTTCCACTTTGATGGAGAATGGTGGACTTCCTGAAGGCACTAATTCTCAAAATCTTATAAAGGAGGCCATTCATGTTATAAGTTGTGGTTATGAAGACAAAACCGAATGGGGAAAAGAGATTGGGTGGATTTATGGCTCAGTGACAGAAGATATCTTAACAGGGTTCAAAATGCACTGTAGAGGGTGGAAATCAGTGTACTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCACCAATAAATCTATCAGATAGGTTGCACCAAGTTTTGAGATGGGCTCTTGGTTCTGTTGAAATTTGCCTTAGTCGCCATTGTCCCCTGTGGTATGGCTATGGAGGAAAGCTTAAGTGGCTAGAAAGGATGGCTTATACCAACACCATAGTATATCCATTCACTTCCATTCCTCTCCTTGCATATTGCATACTACCAGCTGTGTGTCTTCTTACTGGAAAATTCATCATTCCCACCTTGACAAACCTTGCTAGTGTTTGGTTCATGGCTCTATTTATATCCATCATCCTAACCGGTGTCCTTGAGCTTCGGTGGAGCGGAGTTAGCATCGAAGATTGGTGGCGAAACGAGCAATTTTGGGTGATTGGAGGAGTTTCGGCACACCTTTTTGCTGTGTTCCAAGGCCTCCTGAAAGTTCTTGGAGGAGTAGACACCAACTTCACAGTTACAGCAAAAGCAGCAGATGATACTGAGTTCGGAGAGTTATACCTTTTCAAGTGGACAACACTTCTGATCCCACCAACCACCCTCATAATATTGAACATGGTTGGGGTTGTGGCTGGTGTCTCTGATGCCATTAACAATGGATATGGCACATGGGGACCTTTATTTGGGAAGCTATTCTTTGCATTTTGGGTTATTGTTCACTTATATCCTTTCCTAAAGGGTCTCATGGGAAAGCAAAACAGGACTCCAACCATTGTGGTTTTATGGTCAATTCTGCTAGCATCCATTTTCTCATTGATTTGGGTGAGGATCGATCCATTCTTGCCTAAGCAAACTGGTCCAATACTCAAGCAGTGTGGAGTTGAATGCTAA 3138 0.4382 MASFTIGPHHRHLSHDSDEVRPPTRQSASSKVQCRVCGDEIGNKEDGGLFVACYVCGFPVCRPCYEYERSEGTQCCPQCNTRYKRHKGSPRVVGDEEENFDADDFDDEFQIKTGHDHDHDHDDVNHAEDKDKKEQQWHPNAQAFSSAGSVTGKDIEGDKEFYSNAEWEERVEKWKARQEKKGLLNKEEGKDDQDEEEDEYLLAEARQPLWRKVPISSSLINPYRIVIVMRLVILAFFLHFRIMTPAHDAFPLWLTSVICEIWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNKLSPVDVFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVHPMFVKERRAMKREYEEFKVKINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKSGGGGLFSKLYKKKKMKGKNYVRKGSELMFDLEEIEEGLEGFDELEKSSLMSQKQFEKRFGQSPVFIASTLMENGGLPEGTNSQNLIKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEICLSRHCPLWYGYGGKLKWLERMAYTNTIVYPFTSIPLLAYCILPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGTWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4313 1045 MobiDBLite consensus disorder prediction 110 137 - -
Ahy13g4313 1045 SUPERFAMILY Nucleotide-diphospho-sugar transferases 316 832 IPR029044 -
Ahy13g4313 1045 CDD mRING-HC-C4C4_CesA_plant 34 82 - -
Ahy13g4313 1045 MobiDBLite consensus disorder prediction 110 152 - -
Ahy13g4313 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Ahy13g4313 1045 Pfam Cellulose synthase 303 1038 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ahy13g4313 1045 SUPERFAMILY RING/U-box 28 100 - -
Ahy13g4313 1045 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 23 118 - -
Ahy13g4313 1045 Coils Coil 401 421 - -
Ahy13g4313 1045 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 161 1045 - -
Ahy13g4313 1045 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 161 1045 - -
Ahy13g4313 1045 MobiDBLite consensus disorder prediction 1 27 - -
Ahy13g4313 1045 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 23 118 - -
Ahy13g4313 1045 Pfam Zinc-binding RING-finger 31 99 IPR027934 -
Ahy13g4313 1045 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 410 595 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4313 Ahy-Chr13 142725854 142730605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4313 2 1045 Cell Wall Biosynthesis AT5G17420 66.386 0.0 1432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4313 K10999 - gmx:100781996 1806.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4313 13 142725854 142730605 Ahy13g4313 13 142725854 142730605 ECH
Ahy13g4313 13 142725854 142730605 Ahy3g4042 3 139783176 139788163 hybridization