Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4311 ATGGAGGCTGAAACTACTCTTGTCCCTCCCACGGCCACACCGCCACCACCTCATAATGGTGGTTTGGATTGGACAGTTGTAGCGGCGGCCATCGTGTGTGCCTTGCTGTGCGCTCTAGGGCTCAACACCATGCTACAATGCGTGTTTCAGTGTGCGGGGCGTGTTCTCACGCAGCCTCTTCAATGGATCGCTTCTCGAAGGCTCAATTCCGGTCTCAAGAGGAAGGACATGGTGGCTCTCCCTACCTCAACTTTTTCTTCTTCTTCTTCTTCTTCTGAAGCAGCTCCTAGTAACAATAATAATAACAACTGTGCAATATGCTTAGCAGAGTTCAGTGATGGTGAGCAAATAAGGTTTCTTCCGCAGTGCAGTCACCATTTTCACGTGGTTTGCATTGACAAGTGGCTCCTCTCTCATTCTTCTTGTCCTACTTGCAGGCACCTCCTCAAGTCTAATGCTGATTCTTCTTCGCTCCACTCTTTACATATTCTCTTAGCTTAA 501 0.485 MEAETTLVPPTATPPPPHNGGLDWTVVAAAIVCALLCALGLNTMLQCVFQCAGRVLTQPLQWIASRRLNSGLKRKDMVALPTSTFSSSSSSSEAAPSNNNNNNCAICLAEFSDGEQIRFLPQCSHHFHVVCIDKWLLSHSSCPTCRHLLKSNADSSSLHSLHILLA* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4311 166 Pfam Ring finger domain 102 146 IPR001841 -
Ahy13g4311 166 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 11 157 - -
Ahy13g4311 166 PANTHER OS06G0666500 PROTEIN 11 157 - -
Ahy13g4311 166 SMART ring_2 104 145 IPR001841 -
Ahy13g4311 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 152 IPR013083 -
Ahy13g4311 166 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Ahy13g4311 166 SUPERFAMILY RING/U-box 98 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4311 Ahy-Chr13 142719069 142719966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4311 11 149 C3H Transcription Factor Family AT2G17450 43.750 9.30e-37 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4311 - K19040 gmx:100779286 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4311 13 142719069 142719966 Ahy3g4040 3 139777028 139777826 hybridization