Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4308 ATGAACATGGTGCTGGCTTCGTTCCCTGTATACCCAAAACCCTTTGCAAGCGTTAGAGCAGAATTCCACACACAGCAATCTTCTTTTCTCAAGTTCGCACCTCATTCCTATCCTCTTGCAAGCAAAATCCTTGTTAAGAATTTGCCATATAATACTGGTGAGACTACTTTGCAAAAGGAATTTTCGAATTTTGGCAAGATAGCTGAAGTTAAGGTTGCTAAAGATGTAAAAACGAAAAGATCAAAAGGATATGCTTTTATTCAATACATGTGTCAAGATGACGCCATGCTTGCGCTAGAAACAATGGATCAGAAGGATTTTTATGGTAGGACGATTCATGTAGAAATCGCAAAGCTTGGCTGGGATGATTATGGTGCACGGCCAAGGACCTCAGGGCCCCAAAAGAAATGGACTTTGCCAGAGCCAGAGCAAGAGGAGGTGGTAGATTGCTGGTACTGA 459 0.4227 MNMVLASFPVYPKPFASVRAEFHTQQSSFLKFAPHSYPLASKILVKNLPYNTGETTLQKEFSNFGKIAEVKVAKDVKTKRSKGYAFIQYMCQDDAMLALETMDQKDFYGRTIHVEIAKLGWDDYGARPRTSGPQKKWTLPEPEQEEVVDCWY* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4308 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Ahy13g4308 152 CDD RRM3_RBM19_RRM2_MRD1 42 114 - -
Ahy13g4308 152 SUPERFAMILY RNA-binding domain, RBD 41 124 IPR035979 GO:0003676
Ahy13g4308 152 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 21 150 - -
Ahy13g4308 152 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 21 150 - -
Ahy13g4308 152 Gene3D - 21 143 IPR012677 -
Ahy13g4308 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 113 IPR000504 GO:0003723
Ahy13g4308 152 SMART rrm1_1 42 115 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4308 Ahy-Chr13 142697932 142699864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4308 5 114 Eukaryotic Initiation Factors Gene Family AT4G34110 30.000 2.33e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4308 - - gmx:100305971 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4308 13 142697932 142699864 Ahy13g4308 13 142697932 142699864 ECH
Ahy13g4308 13 142697932 142699864 Ahy3g4037 3 139746518 139748511 hybridization