Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4277 ATGGCTTCACTTGTTCCTCAAGGTTCCGACCAGTCTCACCAAAGAATTGATCCAAATTACCCCGTCCACAAACCAAACCTCACCTCTGAGTTTGACTTTTCTTCTTCTGCAACTACTACTCTCAATGAAGCGTTCTTGGTTCCCTTCGATGTCCTGCGTAACGGAGAAGACACCGCATTCTTACATGAAATCTTCTCTTCAATGCCTATATCTCCTCAGATATTGGACCAAATTTTACCTGTCATGGGCAGAACCGCAAGAACAATTCTAAGCCGTGAAGGGTGTGACTCCAGCATGCCAGAGATTGTTGTGAACCTTTATGTTAGGACGCACATTGTTGTCCAAGATTCTGATTTAGTCCGACTTGTGAATCTGTTGGAAAGACCTAAAATTGATGAGCAAGATGATGATGCTGAACAATGCAGTATTTGCTTGGAAGAGTTTAGACATGGTATCGAAGATTCAAGTGTAGAAGTTGTTCGCACAAATTGCTCGCATGTGTTCCATGAACGCTGCATGTTCCGTTGGCTGCGGCATTGTGCCGACCATCAATCACCCTATTCTTGCCCATTGTGCCGCTGCATTATATTTCCAACTTCACAGAGAGATTAA 612 0.4379 MASLVPQGSDQSHQRIDPNYPVHKPNLTSEFDFSSSATTTLNEAFLVPFDVLRNGEDTAFLHEIFSSMPISPQILDQILPVMGRTARTILSREGCDSSMPEIVVNLYVRTHIVVQDSDLVRLVNLLERPKIDEQDDDAEQCSICLEEFRHGIEDSSVEVVRTNCSHVFHERCMFRWLRHCADHQSPYSCPLCRCIIFPTSQRD* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4277 203 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 115 194 - -
Ahy13g4277 203 SMART ring_2 141 192 IPR001841 -
Ahy13g4277 203 Pfam Ring finger domain 140 193 IPR001841 -
Ahy13g4277 203 CDD RING-H2 141 193 - -
Ahy13g4277 203 MobiDBLite consensus disorder prediction 1 21 - -
Ahy13g4277 203 ProSiteProfiles Zinc finger RING-type profile. 141 193 IPR001841 -
Ahy13g4277 203 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 115 194 - -
Ahy13g4277 203 MobiDBLite consensus disorder prediction 1 16 - -
Ahy13g4277 203 SUPERFAMILY RING/U-box 130 199 - -
Ahy13g4277 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 197 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4277 Ahy-Chr13 142299153 142303961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4277 101 203 C3H Transcription Factor Family AT3G58720 30.435 3.59e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4277 - - adu:110273516 271.937