Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4275 ATGGCGGGAAGGGCTAAACGGAAAACCTCTGCTTCTGCGTCACCCTCTTCTTCTGTTCCTTCCCGCAAACTAGTGTTGAACATCAAAACAAGCAGGGGGATGAAGAGATCACTGCGGCAGGCTAATTCGAGAAAGAAACCCAAAGCAAAACAAAAGATTGATGCTAAGAAGCCAAAGAAACCTCCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAACCCCGATGTCAAGTCAATGCGAGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACGATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACAGAAAAGCGCGCAGAATTTGATATGGCAATGGCAGAATATAATAAGAAAATGGAAAACGGTGAATTTGAAGACACTGATGAAGAATCGGATTTTGATGAATAA 441 0.4195 MAGRAKRKTSASASPSSSVPSRKLVLNIKTSRGMKRSLRQANSRKKPKAKQKIDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDMAMAEYNKKMENGEFEDTDEESDFDE* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4275 146 CDD HMGB-UBF_HMG-box 58 124 - -
Ahy13g4275 146 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 6 145 - -
Ahy13g4275 146 SUPERFAMILY HMG-box 44 129 IPR036910 -
Ahy13g4275 146 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 6 145 - -
Ahy13g4275 146 SMART hmgende2 57 128 IPR009071 -
Ahy13g4275 146 MobiDBLite consensus disorder prediction 38 55 - -
Ahy13g4275 146 Pfam HMG (high mobility group) box 58 127 IPR009071 -
Ahy13g4275 146 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 58 127 IPR009071 -
Ahy13g4275 146 MobiDBLite consensus disorder prediction 9 25 - -
Ahy13g4275 146 MobiDBLite consensus disorder prediction 1 60 - -
Ahy13g4275 146 Gene3D High mobility group box domain 41 142 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4275 Ahy-Chr13 142279975 142282738 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ahy13g4275 HMG_box 3.90E-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4275 - - gmx:100809401 180.644