Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4218 ATGGTGAAGATCTCGCTTGGCGGATACGACGATGGGGAAGGACCTAGCAACCGGATCCAGAAGCGACTCAGGATGGAACCAGAAGATGGCCAAGCAAGCAGAAACGAAAAGGAGGAGCATGCAGGAGATGGCGGCGAGGCTAGAAGTGCAGAGCATGATGAAAACCCTGTTGGATCTGTAAGCGACGATAAGGATAGGTCTATTTCTGTGACTATCATCGACCCCGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGACTTCCCCTGTTTTCCAGTGTGAGAATGGTCATATTGCTTGCTCTAATTGCTGTGCCAGACTTGGGAACAAGTGTCCCATGTGCTCAATGCCCATTGGCTATAACCGCTGCAGAGCTATTGAGAAGGTGCTGGAATCTATTAAAATATCATGCCTGAATGCAAAATATGGTTGTAAACATATGTTTAGTTACAGTAAAAAAAATGAACACGAGAAGGAATGTAACTTTCTGCCATGTTTATGCCCGCATTCAGGTTGTGACTTTCTTGCTTCATCTGAGGAGTTATCCCTCCACTTTAGCCATAGGCATATACATTCTGGAATACAGTTTACATACGATAAATTTTTCACTGTCTTCTTAAATCTTGATCACAAAACAATTGTTCTTCAAGAGAAGAATGATGCTAATCTGTTTGTTATTCACAATAACCATGAGCTTCTAGGGAATTTAATCCATATAACTTGCATTGGCCCCAAATCCAAGACAGGGTTTCATTATGATATCTTGGCTAGGTCCCAGGGAACCTCTCTAATATTGCAATCTTATACCAAGATTGTTCAAGGTCACTTTGCTGATGCTCCTTCAGCAGGGATGCTTTTGATTCCTTCTGATTTTTTTGGTTCCGGCCAAATCAAGCTGGATATTCGCATAAGGTCATGA 921 0.4256 MVKISLGGYDDGEGPSNRIQKRLRMEPEDGQASRNEKEEHAGDGGEARSAEHDENPVGSVSDDKDRSISVTIIDPDVLDCCICYEPLTSPVFQCENGHIACSNCCARLGNKCPMCSMPIGYNRCRAIEKVLESIKISCLNAKYGCKHMFSYSKKNEHEKECNFLPCLCPHSGCDFLASSEELSLHFSHRHIHSGIQFTYDKFFTVFLNLDHKTIVLQEKNDANLFVIHNNHELLGNLIHITCIGPKSKTGFHYDILARSQGTSLILQSYTKIVQGHFADAPSAGMLLIPSDFFGSGQIKLDIRIRS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4218 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 22 305 IPR044286 -
Ahy13g4218 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 123 IPR013083 -
Ahy13g4218 306 MobiDBLite consensus disorder prediction 15 61 - -
Ahy13g4218 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 186 IPR013083 -
Ahy13g4218 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 22 305 - -
Ahy13g4218 306 SUPERFAMILY RING/U-box 79 122 - -
Ahy13g4218 306 CDD RING-HC_SIAHs 78 116 - -
Ahy13g4218 306 ProSiteProfiles Zinc finger RING-type profile. 80 116 IPR001841 -
Ahy13g4218 306 Pfam Seven in absentia protein family 123 221 IPR018121 GO:0005737|GO:0006511|GO:0007275
Ahy13g4218 306 MobiDBLite consensus disorder prediction 1 65 - -
Ahy13g4218 306 SUPERFAMILY TRAF domain-like 133 305 - -
Ahy13g4218 306 ProSiteProfiles Zinc finger SIAH-type profile. 133 191 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4218 Ahy-Chr13 141771706 141773691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4218 76 304 C3H Transcription Factor Family AT2G41980 27.755 3.37e-22 92.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4218 13 141771706 141773691 Ahy3g3947 3 138822515 138824109 hybridization