Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4192 ATGTCTCACAGGAAGTTCGAGCACCCGAGACACGGTTCTCTTGGCTTTCTTCCAAGGAAGCGAGCTTCTCGTCATCGTGGAAAAGTGAAGGCTTTCCCAAAAGATGATCCTACTAAACCTTGCAGACTTACTGCCTTCCTGGGTTACAAGGCTGGAATGACACACATTGTTAGAGAAGTTGAAAAGCCTGGATCAAAGCTTCATAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACCCCTCCATTGGTGGTTGTTGGAGTTGTAGGATATGTGAAGACACCCCGCGGTCTTCGCACTTTGAATACTGTTTGGGCTCAGCATTTAAGTGAGGAAGTCAAGAGGCGATTTTACAAGAACTGGTGCAAATCCAAAAAGAAAGCATTTAACAAGTATTCAAAAAAGTATGAAACTGAGGAGGGAAAGAAAGATATTGAATCCCAACTTGAGAAATTGAAAAAATATGCAACTGTCATTCGCATTCTGGCTCATACACAGATAAGGAAGTTGAAGGGTCTTAAGCAGAAGAAGGCACATTTGATGGAGATCCAAGTCAATGGTGGGACTATTGCACAGAAAGTGGACTATGCTTATGGCTTCTTTGAGAAGCAAATCCCAGTTGATGCTGTTTTCCAAAAAGATGAGATGATAGACATCATTGGTGTGACCAAGGGTAAAGGTTATGAAGGTGTTGTAACTAGATGGGGTGTCACTCGCCTTCCACGCAAGACACACAGGGGTCTAAGGAAGGTTGCTTGTATTGGTGCTTGGCACCCTGCTCGTGTTTCTTTCACAGTTGCTAGGGCTGGGCAGAATGGATATCATCACCGAACTGAGTTGAATAAAAAGATCTACAAGCTTGGCAAGTCAGGTCAAGAATCACATACTGCCATCACCGAATTTGACAGGACGGAGAAGGAGATTACCCCCATGGGTGGTTTTCCTCATTATGGTGTGGTAAAGGATGATTACATTATGGTCAGGGGATGCTGTGTTGGACCTAAAAAGCGGGTTCTGACTCTTCGTCAATCACTATTGAAGCAGACCTCTCGTGTGGCTCTTGAGGACATCAAGCTCAAGTTCATCGACACCTCTTCCAAGTTTGGACATGGGCGTTTCCAGACCACTCAAGAGAAGCAGAAGTTTTTCGGTCGCTTGAAGGCCTGA 1170 0.4479 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFNKYSKKYETEEGKKDIESQLEKLKKYATVIRILAHTQIRKLKGLKQKKAHLMEIQVNGGTIAQKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKSGQESHTAITEFDRTEKEITPMGGFPHYGVVKDDYIMVRGCCVGPKKRVLTLRQSLLKQTSRVALEDIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4192 389 Gene3D - 83 207 - -
Ahy13g4192 389 MobiDBLite consensus disorder prediction 1 35 - -
Ahy13g4192 389 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 389 - -
Ahy13g4192 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Ahy13g4192 389 Gene3D Translation factors 44 385 - -
Ahy13g4192 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Ahy13g4192 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Ahy13g4192 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Ahy13g4192 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4192 Ahy-Chr13 141408720 141412740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4192 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 85.530 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4192 K02925 - egr:104449590 745.347