Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4179 ATGGTGGGAAGTGTTGATTCAAGCATGAATGGAGGAGGTGTAGGGGGATGTTTGATCAAAGAACTAGTCCATCATGATGGCGAAAGGGAGAAGATAGTTCTGGGAAGAGATATGCATACGGTGTCGTTTGAAATCACTGAACCAGATCTGGATGATGACGTTACAGGAGAAAGAGAAGCTTATATGGCTAGTGTTTTATCCAAGTACAAAAAATCCCTGACAGAAAAAACCAAGTTCCATCTAGGCTATCCGTACAATCTGGATTTCGACTACGATGCGCTGTGTCAGCTTCAGCACTTCTCCATAAACAACCTGGGGGATCCGTTTATTGAGAGCAACTACGGGGTGCACTCGAGGCAGTTCGAGGTTGGTGTTTTGGACTGGTTTGCAAGGTTGTGGGAACTTGACAAGAACCAGTACTGGGGATACATAACAAACTGTGGCACAGAAGGGAATCTCCATGGAATCCTTGTTGGCAGAGAGGTGTTTCCAGATGGAATCTTGTATGCCTCTCAGGAATCACACTACTCCGTTTTCAAGGCTGCTCGCATGTACAGAATGGACTGTGTCAAAGTCAACACTCTTTCCTCTGGCGAGATTGATTGCCATGATTTTAAGTCCAAGCTTCTTTGTAACAAGGATAAGCCTGCAATTGTTAATGTTAACATAGGTACAACTGTCAAAGGAGCTGTTGATGATCTTGATTTGGTTATTAACAAGCTTCAGGAAGCAGGATTCTCCCATGACAGATTCTATATCCATTGTGATGGGGCTTTGTTTGGTCTCATGTTACCTTTTGTCAAACGAGCTCCGAAAGTGAGTTTCAAGAAGGCAATTGGAAGCGTGAGTGTGTCAGGGCACAAATTCGTTGGGTGTCCAATGCCATGTGGGGTGCTGATAACAAGATTGGAACACGTGAAGGTGCTGTCAAGGAACGTAGAGTACCTTGCCTCGAGAGATGCAACAATCATGGGTAGCCGTAACGGCCACGCGCCACTCTTCCTATGGTACACTCTAAACAGAAAAGGATACAGGGGATTCCGGAAAGAGGTTCAGAAATGCTTGAGGAACGCACACTACTTCAAGGACCGCCTCGTCCACGCGGGGATCGGAGCAATGCTGAACGAGCTCAGCAGCACCGTCGTGTTTGAGCGCCCTCACGACGAGGAGTTCGTGCGCAAGTGGCAGTTGGCGTGCCAGGGGAACATAGCACATGTTGTGGTCATGCCAAACGTCACCATACACAAGCTGGATGATTTTCTTGACGAGCTTGTGCAAAAGCGTGATGCATGGTTCGGAGAAGGGAAATCTCAGCCTCCTTGTATAGCTTCTGATGTTGGCATACACAATTGCCTTTGTGCTTTGCATAGGTGA 1374 0.4694 MVGSVDSSMNGGGVGGCLIKELVHHDGEREKIVLGRDMHTVSFEITEPDLDDDVTGEREAYMASVLSKYKKSLTEKTKFHLGYPYNLDFDYDALCQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELDKNQYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMDCVKVNTLSSGEIDCHDFKSKLLCNKDKPAIVNVNIGTTVKGAVDDLDLVINKLQEAGFSHDRFYIHCDGALFGLMLPFVKRAPKVSFKKAIGSVSVSGHKFVGCPMPCGVLITRLEHVKVLSRNVEYLASRDATIMGSRNGHAPLFLWYTLNRKGYRGFRKEVQKCLRNAHYFKDRLVHAGIGAMLNELSSTVVFERPHDEEFVRKWQLACQGNIAHVVVMPNVTIHKLDDFLDELVQKRDAWFGEGKSQPPCIASDVGIHNCLCALHR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4179 457 Pfam Pyridoxal-dependent decarboxylase conserved domain 167 376 IPR002129 GO:0016830|GO:0019752|GO:0030170
Ahy13g4179 457 Gene3D - 96 339 IPR015421 GO:0003824
Ahy13g4179 457 PANTHER - 24 457 - -
Ahy13g4179 457 Gene3D Aspartate Aminotransferase, domain 1 340 429 IPR015422 GO:0003824
Ahy13g4179 457 SUPERFAMILY PLP-dependent transferases 72 429 IPR015424 -
Ahy13g4179 457 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 281 302 IPR021115 GO:0016831
Ahy13g4179 457 PANTHER SERINE DECARBOXYLASE 24 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4179 Ahy-Chr13 141296538 141298402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4179 180 363 Calmodulin-binding Proteins AT1G65960 24.352 8.35e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4179 K25193 - gmx:100792053 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4179 13 141296538 141298402 Ahy20g0845 20 10907388 10913860 PCT
Ahy13g4179 13 141296538 141298402 Ahy10g0576 10 5760947 5767507 PCT
Ahy20g0845 20 10907388 10913860 Ahy13g4179 13 141296538 141298402 PCT
Ahy10g0576 10 5760947 5767507 Ahy13g4179 13 141296538 141298402 PCT