Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4172 ATGGTGAACGTTCCGAAGACAAAGAAGACGTACTGCAAGAGCAAGGAGTGCAGGAAGCACACTCTTCACAAGGTTACCCAATACAAGAAGGGCAAGGATAGCATCGCCGCTCAGGGTAAGCGCCGTTATGACCGCAAGCAATCCGGTTATGGTGGCCAGACCAAGCCCGTCTTCCACAAAAAGGCCAAGACCACCAAGAAAATTGTGTTGAGGCTTCAATGCCAGGGCTGCAAACATGTCTCCCAGCATCCTATTAAGAGATGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGAAAAGGAACTTCCCTCTTCTAA 318 0.4937 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4172 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Ahy13g4172 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Ahy13g4172 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
Ahy13g4172 105 Gene3D - 1 105 - -
Ahy13g4172 105 MobiDBLite consensus disorder prediction 28 56 - -
Ahy13g4172 105 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 2 105 - -
Ahy13g4172 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 2 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
Ahy13g4172 105 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4172 Ahy-Chr13 141251060 141252196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4172 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 92.381 3.88e-68 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4172 K02929 - egr:104421613 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4172 13 141251060 141252196 Ahy3g3896 3 138340325 138341449 hybridization
Ahy13g4172 13 141251060 141252196 Ahy20g0841 20 10882462 10883684 PCT
Ahy13g4172 13 141251060 141252196 Ahy10g0569 10 5697753 5698973 PCT
Ahy20g0841 20 10882462 10883684 Ahy13g4172 13 141251060 141252196 PCT
Ahy10g0569 10 5697753 5698973 Ahy13g4172 13 141251060 141252196 PCT