Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4170 ATGGGGGATAGCAATGTCAATCTTCCACCGGGGTTTCGATTTTATCCCACTGATGAAGAGCTTGTAGTCCATTTCCTTCAGAGAAAAGCAGCACTTCTACCTTGCCACCCTGATGTCATTCCTGATCTTGATCTCTACTCTTTTGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGGAACCAATGGTACTATTACAGCAGAAGGACACAAAATAGGGTCACTGCCAATGGTTATTGGAATCCAATGGGAATTGAAGAGGCAGTGGTTTCAAACTCAAGCAACAGGAGAGTTGGTATCAAGAAATTTTATGTGTTCTATGTTGGAGAAGCCCCTCATGGTAACAGAACCAATTGGATCATGCAAGAGTATCGTCTTTCAGATTCTGCAGCATCCTCTAGCAGATCATCAACCAAAAGAAAATCACAACCAAAAACAGATCATAGTAAATGGGTGGTATGTAGAGTCTATGAAAGTGATGAAAATGATGATGATGGTGATGGTGATGGAACAGAACTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAGTAAGCTTGCCAAATTAG 585 0.4137 MGDSNVNLPPGFRFYPTDEELVVHFLQRKAALLPCHPDVIPDLDLYSFDPWELDGRALAEGNQWYYYSRRTQNRVTANGYWNPMGIEEAVVSNSSNRRVGIKKFYVFYVGEAPHGNRTNWIMQEYRLSDSAASSSRSSTKRKSQPKTDHSKWVVCRVYESDENDDDGDGDGTELSCLDEVFLSLDDLDEVSLPN* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4170 194 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Ahy13g4170 194 PANTHER NAC TRANSCRIPTION FACTOR 56 5 191 - -
Ahy13g4170 194 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Ahy13g4170 194 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Ahy13g4170 194 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Ahy13g4170 194 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4170 Ahy-Chr13 141206937 141208185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4170 4 159 NAC Transcription Factor Family AT1G69490 44.512 7.06e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy13g4170 NAM 2.50E-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4170 - - gmx:100788893 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4170 13 141206937 141208185 Ahy3g3894 3 138316227 138320950 hybridization
Ahy13g4170 13 141206937 141208185 Ahy20g0839 20 10819787 10821093 PCT
Ahy13g4170 13 141206937 141208185 Ahy10g0567 10 5667741 5669291 PCT
Ahy20g0839 20 10819787 10821093 Ahy13g4170 13 141206937 141208185 PCT
Ahy10g0567 10 5667741 5669291 Ahy13g4170 13 141206937 141208185 PCT