LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g4162	ATGAGAATGAGGTTCTTTTGGAGCTGCATGGAGCGAGTGACTTCATGGTGCTTCATGGGACAGTTTCTCATTTGTGCAATTCTGGTGCTTGACGTGATGCTGAAGGTTTCTGCTAATTCAGAAGGTGATGCCCTGAATTCTTTGAAGAACAGCTTGACAGATCCTGGTGATGTTCTTCAAAGCTGGGATTCCACTCTTGTCAATCCATGTACATGGTTTCATGTTACTTGCAGCAATGATAATAGTGTGATCCGTGTTGATCTAGGAAATGCAAACCTTTCCGGTCAACTAGTTCCGCAACTTGGTCAGCTCCCAAATTTACAGTACTTGGAACTTTATAGCAATAATATCACTGGGAAAATTCCAATTGAGCTTGGAAATTTGAAAAACTTGGTGAGCTTGGATCTGTACGTGAATAAGTTAACCGGCCCTATACCGGACTCATTGAGCAACCTTAAAAAGCTACGTTTCCTTGATCTATCAAACAACAATTTAACAGGAGATGTTCCAATAAATGGTTCATTTTCAATGTTCACTCCAATCAGTTTTAAAAATAATAACCCTGGCTTGAATGAAACAAACCCTCCATCTCCCCCCACTGCTCCACCTCCAAAAGCTTCTTCAGGTAACAGTGCCACTGGATCTATTGCTGGAGGAGTTGCTGCAGGTGCTGCTCTGTTGTTTGCAGGCCCTGCCATTGCAGTTGCCTGTTTGCGAAGAAGGAAACGTGCTGATTATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCATCTTGGTCAGCTTAAAAAGTTTTCGCTGCGTGAGCTGCAAGTCGCTACAGATAGCTTTAATAGCAAGAATATTCTTGGAAGAGGAGGGTTTGGCAAGGTTTATAAAGGACGCCTTACCAATGGTACTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACGCAGGGTGGGGAGCTTCAATTTCAAACTGAAGTGGAAATGATTAGCATGGCTGTCCATCGTAATTTGCTCCGGTTGCATGGTTTTTGTATGACACCTACCGAACGGTTGCTTGTGTATCCTTTCATGGCAAATGGAAGTGTAGCATCTTGTTTACGAGATCGTCCAGAAACACGTCCACCACTTGACTGGAAAAAAAGGAAGAGTATAGCACTGGGGTCTGCTCGGGGACTTGCTTATTTACATGATCATTGTGATCCAAAGATTATTCATCGTGATGTCAAAGCTGCTAATATATTGCTGGATGAGGATTTTGAAGCAGTTGTTGGAGATTTTGGCTTAGCAAAGCTGATGGATTACAGAAATACTCATGTTACCACTGCTGTACGTGGCACAATCGGGCATATAGCGCCGGAGTACCTCTCAACCGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTGATAACCGGACAGAGGGCTTTTGATCTAGCGCGTCTTGCCAATGATGATGATGTCATGTTGCTTCATTGGGTTAAAGGACTTCTGAAGGACAAGAAGCTGGAGACACTGGTTGATGCAGATTTACAGGGAAATTATGAAGATGAAGAGGTAGAGCAACTGATCCAGGTGGCCTTGTTGTGCACACAAAGCTCCCCTATGGAAAGGCCTAAGATGTCTGAGGTGGTGAGCATGCTAGAAGGTGATGGTTTGGCAGAAAAATGGGATCAATGGCAGAAAGGGGAGATGAACCAGCATGAATTCGATCGCATGTGCTATCATGCTGCTGATATGCTCTTAGACTCCACTTTCAATATCCCAGCAGATGAACTCTCTGGTCCTAGATGA	1806	0.4369	MRMRFFWSCMERVTSWCFMGQFLICAILVLDVMLKVSANSEGDALNSLKNSLTDPGDVLQSWDSTLVNPCTWFHVTCSNDNSVIRVDLGNANLSGQLVPQLGQLPNLQYLELYSNNITGKIPIELGNLKNLVSLDLYVNKLTGPIPDSLSNLKKLRFLDLSNNNLTGDVPINGSFSMFTPISFKNNNPGLNETNPPSPPTAPPPKASSGNSATGSIAGGVAAGAALLFAGPAIAVACLRRRKRADYFFDVPAEEDPEVHLGQLKKFSLRELQVATDSFNSKNILGRGGFGKVYKGRLTNGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMANGSVASCLRDRPETRPPLDWKKRKSIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLHWVKGLLKDKKLETLVDADLQGNYEDEEVEQLIQVALLCTQSSPMERPKMSEVVSMLEGDGLAEKWDQWQKGEMNQHEFDRMCYHAADMLLDSTFNIPADELSGPR*	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy13g4162	601	Gene3D	Transferase(Phosphotransferase) domain 1	355	572	-	-
	Ahy13g4162	601	Gene3D	Ribonuclease Inhibitor	37	197	IPR032675	-
	Ahy13g4162	601	SUPERFAMILY	Protein kinase-like (PK-like)	257	553	IPR011009	-
	Ahy13g4162	601	ProSiteProfiles	Protein kinase domain profile.	278	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy13g4162	601	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	20	171	-	-
	Ahy13g4162	601	Pfam	Leucine rich repeat N-terminal domain	38	78	IPR013210	-
	Ahy13g4162	601	Pfam	Protein kinase domain	279	550	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy13g4162	601	PANTHER	LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED	141	601	IPR031048	GO:0004675\|GO:0005102\|GO:0006468
	Ahy13g4162	601	PANTHER	LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED	20	171	IPR031048	GO:0004675\|GO:0005102\|GO:0006468
	Ahy13g4162	601	SUPERFAMILY	L domain-like	39	172	-	-
	Ahy13g4162	601	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	401	413	IPR008271	GO:0004672\|GO:0006468
	Ahy13g4162	601	SMART	serkin_6	278	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy13g4162	601	Gene3D	Phosphorylase Kinase; domain 1	247	354	-	-
	Ahy13g4162	601	MobiDBLite	consensus disorder prediction	186	212	-	-
	Ahy13g4162	601	Pfam	Leucine rich repeat	105	165	IPR001611	GO:0005515
	Ahy13g4162	601	ProSitePatterns	Protein kinases ATP-binding region signature.	284	306	IPR017441	GO:0005524
	Ahy13g4162	601	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	141	601	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g4162	Ahy-Chr13	141112166	141117273	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g4162	27	601	Receptor kinase-like Gene Family	AT4G33430	69.954	0.0	842

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Ahy13g4162		Pkinase	1.30E-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy13g4162	K13416		-	gmx:100800522	907.131

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy13g4162	13	141112166	141117273	Ahy13g4162	13	141112166	141117273	ECH
	Ahy13g4162	13	141112166	141117273	Ahy3g3884	3	138202938	138207622	hybridization
	Ahy13g4162	13	141112166	141117273	Ahy20g0831	20	10672192	10678105	PCT
	Ahy13g4162	13	141112166	141117273	Ahy10g0559	10	5528247	5534088	PCT
	Ahy20g0831	20	10672192	10678105	Ahy13g4162	13	141112166	141117273	PCT
	Ahy10g0559	10	5528247	5534088	Ahy13g4162	13	141112166	141117273	PCT