Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4141 ATGTCTCACTTTGGAAGGTCAGGACCTCCGGACATCTCCGACACCTACTCCCTCCTCGTACTTAACATCACTTTCCGCACAACCGCCGACGACCTCTTTCCTCTCTTTGACAAGTATGGCAAGGTCGTTGACATCTTCATCCCCAAAGATCGAAGGACTGGCGAGTCCAGGGGTTTTGCCTTTGTGCGTTACAAGTATGCCGATGAGGCTCAGAAGGCCGTCGAAAGGCTTGACGGAAGAATGGTTGATGGTCGGGAAATAACTGTCCAATTTGCAAAATATGGCCCCAATGCGGAGCGCATTCACAAAGGAAGGATTATTGAATCAATGCCAAGAACAAGGCATAGGTCAAGGAGCCGCAGCCCAAGGAGAAGGTACCGTGATGATTACAGAGACAGGGATTACCGTAGGAGAAGTCGTAGCAGAAGTTATGATAAGTATGAACGTGACCGGTACCGTGGGAGGGACAGAGATTATCGTCGTCGAAGCAGAAGCCGCAGTGCCAGCCCTGATTACAAGAGTCGAGGGAGGGGGCGCTATGATGATGATGATGATGATCGTCGTAGTAGAAGCCGGAGCCGATCGGTGGATAGCCGCTCCCCTGCACATAGTCCTAGTCCTCGAAGGAGTCCTTCACCCCGCAGGAGTATGTCTCCTGAAAGGAGTGCATCCCCAAGAAGTCCTAGAGGTGAAAGTCCTGATAATCGTAGCCGTGATGGACGATCTCCCTCACCTCGCAGTGTCTCACCACGTGGTCGCCCTGATGCTTCGCGAAGCCCATCCCCTCGGAATTCAAATGGTGATGCGTAA 810 0.5235 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIESMPRTRHRSRSRSPRRRYRDDYRDRDYRRRSRSRSYDKYERDRYRGRDRDYRRRSRSRSASPDYKSRGRGRYDDDDDDRRSRSRSRSVDSRSPAHSPSPRRSPSPRRSMSPERSASPRSPRGESPDNRSRDGRSPSPRSVSPRGRPDASRSPSPRNSNGDA* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4141 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Ahy13g4141 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Ahy13g4141 269 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 268 - -
Ahy13g4141 269 SMART rrm2_1 17 90 IPR003954 GO:0003676
Ahy13g4141 269 MobiDBLite consensus disorder prediction 198 230 - -
Ahy13g4141 269 MobiDBLite consensus disorder prediction 102 269 - -
Ahy13g4141 269 MobiDBLite consensus disorder prediction 123 197 - -
Ahy13g4141 269 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 268 - -
Ahy13g4141 269 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Ahy13g4141 269 SMART rrm1_1 17 90 IPR000504 GO:0003723
Ahy13g4141 269 Gene3D - 4 104 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4141 Ahy-Chr13 140940687 140944307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4141 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 1.36e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4141 K12891 - gmx:100778928 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4141 13 140940687 140944307 Ahy3g3864 3 138040193 138042584 hybridization