Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4124 ATGGAAAACGACGACGTTGATATGCTCGGCGCCGAACACACCGAAGCTGACTTGGACGACATGAAGAGGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGAAGGAGATGCAAGCCAAGGTCGAGAAGGAGATGGGATCTATGCAAGATCCTGCTACTGCTGGTGCAAGTCAGAGCAATAGAGAGGAAGTAGATGCTCGGTCAGTCTTTGTAGGCAATGTGGACTATTCATGTACTCCCGAAGAAGTGCAGCAACATTTTCAATCATGTGGAACAGTAAACCGTGTCACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCATATGTAGAGTTTCTTGAAGTTGAGGCTGTTCAAGAGGCTCTTCTGCTGAATGAATCTGAACTACATGGGCGCCAATTGAAGGTGACTGCAAAGAGGACCAACATACCAGGGATGAAGCAGTATCGACCCCGCCGTTCCAATCCTTACATGGGGTTTCGAGGCAGAGCTGCATTTGCTCCTCCATTTGCCTTTTCCCCATATGGATACGGAAAGGTTCCAAGGTTCAGGATGGCAATGCGCTACAGCCCCTATTATTAA 591 0.4839 MENDDVDMLGAEHTEADLDDMKRRLKEMEDEAAALKEMQAKVEKEMGSMQDPATAGASQSNREEVDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMGFRGRAAFAPPFAFSPYGYGKVPRFRMAMRYSPYY* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4124 196 CDD RRM_II_PABPs 69 140 - -
Ahy13g4124 196 SMART rrm1_1 69 140 IPR000504 GO:0003723
Ahy13g4124 196 Coils Coil 11 45 - -
Ahy13g4124 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 14 193 - -
Ahy13g4124 196 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 14 193 - -
Ahy13g4124 196 SUPERFAMILY RNA-binding domain, RBD 56 166 IPR035979 GO:0003676
Ahy13g4124 196 Gene3D - 7 141 IPR012677 -
Ahy13g4124 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Ahy13g4124 196 MobiDBLite consensus disorder prediction 43 65 - -
Ahy13g4124 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4124 Ahy-Chr13 140766724 140769205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4124 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 1.08e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4124 K14396 - csv:101213499 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4124 13 140766724 140769205 Ahy3g3850 3 137919704 137922221 hybridization
Ahy13g4124 13 140766724 140769205 Ahy20g0793 20 10076226 10079704 PCT
Ahy13g4124 13 140766724 140769205 Ahy10g0517 10 5121868 5125425 PCT
Ahy20g0793 20 10076226 10079704 Ahy13g4124 13 140766724 140769205 PCT
Ahy10g0517 10 5121868 5125425 Ahy13g4124 13 140766724 140769205 PCT