LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g4121	ATGGCATCTGAAAGCATGGTGATAGAGATTGAGCATGATGATAATGAAGATGAGAAGGGGAATAAGAGAAACGAAGAGAAAGAGAAGGAGGGTATGTGTATGTGTATGACATGGAAGGATGTGTGGGTGACTGCATCAATGGGAAACAAAGGAAGCAAACCAATTCTTTCCGGTCTAACCGGTTATGCCAAACCGGGCCAGCTATTGGCCATAATGGGTCCTTCTGGTTCTGGCAAGTCTACCCTTCTTGATGCCTTAGCAGGTAGATTAGATTCAAACACAAGACAAACAGGAGAGATTCTCATCAACGGTCGCAAAGAAGCGCTGGCCTATGGAATCTCGGCATATGTGACACAAGATGATACCTTATTAACAACCTTAACGGTGAGGGAAGCAGTGCACTACTCAGCTCAACTCCAACTACCTGATTCCATGTCCAAGGCAGAGAAAAGAGAGAGAGCAGAGATTACAATAAGAGAAATGGGTCTGCAAGATGCCATTAACACAAGAATTGGAGGTTGGGGCATTAAAGGAATCAGTGGTGGTCAGAAGAGACGTGTGAGCATCTGCATTGAGATCCTAACACGCCCAAGGCTCTTGTTTCTTGATGAACCAACAAGTGGACTTGACAGTGCTGCTTCCTATTATGTCATGAAAAGAATTGCAAACCTTGTTCAGAAAGATGGCATTCAAAGAACCGTTATTGCTTCAATACATCAACCAAGCACTGAAGTCTTTCAACTTTTCCATAACCTTTGTCTTCTCTCTTCTGGTACAACTGTTTACTTTGGACCTGCCTCAACTGCTACTCAGTTTTTTGCTTCCAATGGTTTTCCATGTCCTGCACTCCAAAACCCTTCTGATCATTTACTGAAAACAATAAACAAGGATTTTGATCAGGATACTGACATGGGTTTATCTGGCACTAGAACAGTGCCTACAGAAGAAGCAATTAGAATCCTTATAAGCGCATATGAATCATCTGAAATTAACCAACAAGTTCAACAAGAAGTTGCAATGCTATCTAACCAGGAGACTAGATCAGTAGATCATAAGAAGAGAAGGCGTGCTGGTTTCCTTAATCAGTGCATTGTTCTAACCAAAATATCATGCGTGAACATGTTTCGTGATCTAGGCTATTATTGGTTACGTCTTGGAATATACATTGCATTGGCCATAGCCACTGCCACAGTTTTCTATGATCTAGGTACAAGTTTCAGCACAATTCAGGACAGAGGAGCACTTCTTATGTTTGAATCTTCATTCATAACTTTCATGACCATTGGTGGATTCCCTTCCTTTGTGGAGGTCATGAAGGTATTTGAACGAGAAAGATTGAATGGGCATTATGGTGTTGTGGCATTTGTAATTGGGAACACAGTATCTAGTGTGCCATACTTGGTTCTAGTATCAGTGATTCCAGGAGCCATAGCTTATTACCTTCCTCATCTTCAAAGAGGATTCGACCATTTTGTTTACTTCATATGTGTTCTGTTTTCTTGCCTCATGTTGGTTGAAAGCCTAATGATGATAGTTGCAAGCGTAGTCCCAAACTATCTAATGGGAATCATAAGCGGCGCCGGAATCCAAGGAATCATGATGCTGGCCGGAGGGTTCTTCAGATTGCCCAATGATCTTCCCAAACCATTTTGGAGATACCCAATGTTCTATGTTGCATTTCATAGATTTGCATTCCAAGGATTGTACAAGAACGAGTTTCAGGGGCTAAGCTTTGCAACAAATGATGGAAATGGCTCCTACATTAGTGGTGACCAGATTCTGAGGGACACGTGGCAAGTTGACATGAGTTACTCCAAGTGGGTCGATCTCGGAATCTTGCTTGGGATGATTTTGGTGTATCGAGTGTTGTTCTTCTTGATCATCAAGATTACGGAGAAGTTGAAGCCATTTTTTGTGTCATTCATTTCAGGGTCTCCCAAGCGAGCAACACTAGTGATGGAGAATAATGATGATAACTCTGCACTAAGTCATGAAGCATAA	2001	0.4193	MASESMVIEIEHDDNEDEKGNKRNEEKEKEGMCMCMTWKDVWVTASMGNKGSKPILSGLTGYAKPGQLLAIMGPSGSGKSTLLDALAGRLDSNTRQTGEILINGRKEALAYGISAYVTQDDTLLTTLTVREAVHYSAQLQLPDSMSKAEKRERAEITIREMGLQDAINTRIGGWGIKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKRIANLVQKDGIQRTVIASIHQPSTEVFQLFHNLCLLSSGTTVYFGPASTATQFFASNGFPCPALQNPSDHLLKTINKDFDQDTDMGLSGTRTVPTEEAIRILISAYESSEINQQVQQEVAMLSNQETRSVDHKKRRRAGFLNQCIVLTKISCVNMFRDLGYYWLRLGIYIALAIATATVFYDLGTSFSTIQDRGALLMFESSFITFMTIGGFPSFVEVMKVFERERLNGHYGVVAFVIGNTVSSVPYLVLVSVIPGAIAYYLPHLQRGFDHFVYFICVLFSCLMLVESLMMIVASVVPNYLMGIISGAGIQGIMMLAGGFFRLPNDLPKPFWRYPMFYVAFHRFAFQGLYKNEFQGLSFATNDGNGSYISGDQILRDTWQVDMSYSKWVDLGILLGMILVYRVLFFLIIKITEKLKPFFVSFISGSPKRATLVMENNDDNSALSHEA*	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy13g4121	666	ProSitePatterns	ABC transporters family signature.	179	193	IPR017871	GO:0005524
	Ahy13g4121	666	Pfam	ABC-2 type transporter	239	344	IPR043926	GO:0140359
	Ahy13g4121	666	Pfam	ABC transporter	59	207	IPR003439	GO:0005524
	Ahy13g4121	666	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	36	282	IPR003439	GO:0005524
	Ahy13g4121	666	SMART	AAA_5	65	254	IPR003593	-
	Ahy13g4121	666	Pfam	ABC-2 type transporter	362	573	IPR013525	GO:0016020\|GO:0140359
	Ahy13g4121	666	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	40	273	IPR027417	-
	Ahy13g4121	666	PANTHER	WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN	6	657	-	-
	Ahy13g4121	666	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 11	6	657	-	-
	Ahy13g4121	666	MobiDBLite	consensus disorder prediction	7	29	-	-
	Ahy13g4121	666	Gene3D	-	22	277	IPR027417	-
	Ahy13g4121	666	MobiDBLite	consensus disorder prediction	1	29	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g4121	Ahy-Chr13	140706253	140710627	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g4121	52	243	Calmodulin-binding Proteins	AT2G36910	30.049	8.33e-12	67.0