Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4080 ATGAAGCCACACTTTATGCCTCAAACGTTATCCTCTGTTTCGCCGCTCATGGGTTTTCTTCCCAGAAAACTAGTGCTACTGCAACTGCAACATCAGAGTGAGCATATGATTATGAACACAGTATCACATAGCCCTAGCCCTAGCCCAGGCCCAGGCCCAGGCCCAGCACCTTCTCCTTCCCCTCTTCAATCATCACTGTCACTCCCTATCCCCATCCCGCCAAAGTTCCCTTTCCCTTTAATCCCTATCCGTGATGAAGGGTTTCACGTGCATCTTCTTCAACTTGGCATGATTATCATGGCCGGCACCGTTGGAATCGCGATGCTTCTATGTGCCGTCTCCTTGATCCGAAGGATCTGTTGTTCCTGGAGGCATAACCGCACGGGAGGAAACACGCCCATACTGTTCCATGTTAATGGAGATTCTGCTGTTTCAGGTTCGGATTTCGATGATGATGAGGGAGCCTTGGTTGATCACCCTATATGGTTCATCCGCACGGTGGGGCTGCAGCAATCGGTTATAGATTCCATCACAGTGTTTGTTTACAGAAAAGGCGAGAGGCTAATTGATGGTTCAGATTGCTCTGTTTGCCTCGCTGAGTTCCAAGAAAACGACTCTCTCAGGCTGTTACCAAAGTGCAGTCACGCCTTTCACATCCCTTGCATTGACACGTGGCTTAGATCGCACAAGAATTGCCCTCTCTGCCGCGCACCCGTTCTTCATGATTCCGGTGCCGCAACTGCTATTAGTACGGATGTGATAGTTCCCGAGGCTGATTCAAATGGTTCTGGTGAGAATCAAGAAAATGGTGAGAGTAGTTCAGTGAGGAATATTGGAGATGAGGATGATGGGGGTGAAGATGGAGAAACCCTAGAAAAGATGAATAGGCACAGAGATGCTTCGATTACACAACCAATGAGGAGGTCGGTTTCCATGGATTCATCATCCATGTTTCGTGATTTGAATTCTGATGATCAAGATGACAAAATCACCAATCCAAGTTCAAGAATATACAAACTGGCTTCAATAGCATTTCAGAAGAGGCCTAGAAGCCCTTTTTCACATAACAGGAAATGCTCCACTTCTACACACTCTAGGAGCCACAGTTCAACTCTCCCTTTGTAG 1125 0.4738 MKPHFMPQTLSSVSPLMGFLPRKLVLLQLQHQSEHMIMNTVSHSPSPSPGPGPGPAPSPSPLQSSLSLPIPIPPKFPFPLIPIRDEGFHVHLLQLGMIIMAGTVGIAMLLCAVSLIRRICCSWRHNRTGGNTPILFHVNGDSAVSGSDFDDDEGALVDHPIWFIRTVGLQQSVIDSITVFVYRKGERLIDGSDCSVCLAEFQENDSLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVLHDSGAATAISTDVIVPEADSNGSGENQENGESSSVRNIGDEDDGGEDGETLEKMNRHRDASITQPMRRSVSMDSSSMFRDLNSDDQDDKITNPSSRIYKLASIAFQKRPRSPFSHNRKCSTSTHSRSHSSTLPL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4080 374 MobiDBLite consensus disorder prediction 256 274 - -
Ahy13g4080 374 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 69 325 IPR044675 -
Ahy13g4080 374 MobiDBLite consensus disorder prediction 39 64 - -
Ahy13g4080 374 ProSiteProfiles Zinc finger RING-type profile. 194 236 IPR001841 -
Ahy13g4080 374 PANTHER RING-H2 FINGER PROTEIN ATL54 69 325 - -
Ahy13g4080 374 MobiDBLite consensus disorder prediction 46 64 - -
Ahy13g4080 374 MobiDBLite consensus disorder prediction 355 374 - -
Ahy13g4080 374 MobiDBLite consensus disorder prediction 304 319 - -
Ahy13g4080 374 SUPERFAMILY RING/U-box 182 242 - -
Ahy13g4080 374 MobiDBLite consensus disorder prediction 256 374 - -
Ahy13g4080 374 SMART ring_2 194 235 IPR001841 -
Ahy13g4080 374 Pfam Ring finger domain 193 236 IPR001841 -
Ahy13g4080 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 244 IPR013083 -
Ahy13g4080 374 MobiDBLite consensus disorder prediction 289 303 - -
Ahy13g4080 374 CDD RING-H2_PA-TM-RING 193 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4080 Ahy-Chr13 140282348 140284008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4080 148 319 C3H Transcription Factor Family AT4G33565 46.328 2.22e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4080 - - adu:107481823 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4080 13 140282348 140284008 Ahy3g3802 3 137430323 137431767 hybridization