Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4043 ATGCAGAGCCAACTTGTGTGTAATGGGTGTAGGAGCATTTTGCTTTATCCTAGAGGGGCAACCAATGTGTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGAATGGAGATGTCTCAACTTGTTTGCGGGGGATGTAGGACACTGCTAATGTACACACGTGGAGCTACAAGCGTGAGATGTTCCTGCTGTCAAACTGTAAACCTTGCACCACCAGCACCCAGTCAAGTCGCCCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTACGGAGCTCCTTCTGTCAAATGTGCACTTTGCCAATATGTTACTAATGTCAATATGAACAATGGAAGGCTTCCAATCCCAGTCCATAGACCTAATGGAACAACCAACTATGGGACAGTACCCTCTACTTCAACATCGATGCCCCAATCTCAGACCCAAACCGTTGTGATAGAGAATCCCATGACTGTTGATTCAAATGGAAAATTGGTTAGCAATGTTGTTGTTGGGGTTACAACAGATAAAAAATAA 534 0.4513 MQSQLVCNGCRSILLYPRGATNVCCALCNTITSVPPPGMEMSQLVCGGCRTLLMYTRGATSVRCSCCQTVNLAPPAPSQVAHVHCGNCRTTLMYPYGAPSVKCALCQYVTNVNMNNGRLPIPVHRPNGTTNYGTVPSTSTSMPQSQTQTVVIENPMTVDSNGKLVSNVVVGVTTDKK* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4043 177 PANTHER PROTEIN LSD1 1 177 - -
Ahy13g4043 177 PANTHER PROTEIN LSD1 1 177 IPR040319 -
Ahy13g4043 177 Pfam LSD1 zinc finger 85 109 IPR005735 -
Ahy13g4043 177 Pfam LSD1 zinc finger 46 70 IPR005735 -
Ahy13g4043 177 Pfam LSD1 zinc finger 7 31 IPR005735 -
Ahy13g4043 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Ahy13g4043 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 82 112 IPR005735 -
Ahy13g4043 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4043 Ahy-Chr13 139875379 139878707 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Ahy13g4043 zf-LSD1 1.50E-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4043 - - gmx:100776394 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4043 13 139875379 139878707 Ahy3g3767 3 137073912 137077217 hybridization