Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4016 ATGGAGATTCACTACAGTAGCAGTTACTTCGAAAGGCGCCCCATAATCAGGTCCAAGGCGCCAGCTGCTAAATGGGTTAAAGAATGGGTTCCCCAAGATGTTGTAGCCACTGGGGGGAAATGCATGCTCTTAAGATGGGTTAGAGAGGATGCCTCGAAGGCATTGCAGGAAAAGGAAAAAGAACCGGCTGTACCTGAACCGGAACCAGAGCCAACTACTGAAGTGCTTTTTCTTTGCAGCTATGAAGGATGTGGAAAGACGTTCATTGATGCCGGTGCATTGAGGAAACATTCTCACATTCATGGAGAGAGACAATTTGTTTGTCACTATGAGGGGTGTGGAAAGAAATTTCTTGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCACACAGGGGAGAGGGATTTTGTTTGTCCCCATGAAGGCTGTGGTAAGGCCTTCTCTCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGTCCGTACTCAGATTGCGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCACATTGCCTCTCACCATGAAAAGAACACAGCAGTGGAGGTGCCGAAGTATACTCCGCCTTCAGAAAGACAACCAAAAACTACTAAACATTCTGGCGCAGCATATGGTTCTGCATCGTCAGATCGCCCCTATGCATGCCCTTATGAAGGATGTGAAAAAGCCTACATTCATGAATACAAGCTTAAACTCCATTTGAAGAGGGAACATCCTGGGCATATGTCTGATGAAAATGCAGAGCATGCTCAAGCTAATCTTGATAATGAAATGGATGAAGCAAGCGATCAAGATGCCTATGGTGGCAAACGGTCAAATGGTAAAATTCAGAAGCAAAGTAAGCTAAAACCAAACCTTAAGTTGCCTCCTTCCAAAATCGCCAAACGCAAAGCACCGCTGCCTACTCCTGCCACCATAGCTGTAACAAAGAAACCTTGGTCTGTGAATGGGAAAGGGGAGGCTTACAACGAAGAAGACAGCGAAGAAACAGAAGAGGAGGATCGCGACAATGTTGAAGATGGTTGGAGATATGCTGGCAACAATGACGACGATGATGAAGAAACAGAATATGAAGACTGA 1128 0.4433 MEIHYSSSYFERRPIIRSKAPAAKWVKEWVPQDVVATGGKCMLLRWVREDASKALQEKEKEPAVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYSDCGKRYAHEYKLKNHIASHHEKNTAVEVPKYTPPSERQPKTTKHSGAAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAEHAQANLDNEMDEASDQDAYGGKRSNGKIQKQSKLKPNLKLPPSKIAKRKAPLPTPATIAVTKKPWSVNGKGEAYNEEDSEETEEEDRDNVEDGWRYAGNNDDDDEETEYED* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4016 375 Gene3D Classic Zinc Finger 201 271 - -
Ahy13g4016 375 Gene3D Classic Zinc Finger 163 195 - -
Ahy13g4016 375 Gene3D Classic Zinc Finger 103 133 - -
Ahy13g4016 375 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Ahy13g4016 375 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Ahy13g4016 375 SMART c2h2final6 136 160 IPR013087 -
Ahy13g4016 375 SMART c2h2final6 166 190 IPR013087 -
Ahy13g4016 375 SMART c2h2final6 229 254 IPR013087 -
Ahy13g4016 375 SMART c2h2final6 77 101 IPR013087 -
Ahy13g4016 375 SMART c2h2final6 106 130 IPR013087 -
Ahy13g4016 375 MobiDBLite consensus disorder prediction 206 220 - -
Ahy13g4016 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Ahy13g4016 375 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Ahy13g4016 375 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Ahy13g4016 375 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Ahy13g4016 375 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Ahy13g4016 375 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Ahy13g4016 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Ahy13g4016 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Ahy13g4016 375 Gene3D Classic Zinc Finger 77 102 - -
Ahy13g4016 375 Gene3D Classic Zinc Finger 134 161 - -
Ahy13g4016 375 Coils Coil 260 280 - -
Ahy13g4016 375 MobiDBLite consensus disorder prediction 192 226 - -
Ahy13g4016 375 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Ahy13g4016 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Ahy13g4016 375 PANTHER BNAA03G13270D PROTEIN 4 374 - -
Ahy13g4016 375 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Ahy13g4016 375 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 374 - -
Ahy13g4016 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Ahy13g4016 375 MobiDBLite consensus disorder prediction 274 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4016 Ahy-Chr13 139597238 139599831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4016 10 361 C2H2 Transcription Factor Family AT4G06634 64.754 1.92e-149 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy13g4016 zf-C2H2 0.00038 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4016 - - zju:107412546 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4016 13 139597238 139599831 Ahy3g3742 3 136810898 136813444 hybridization