Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3980 ATGGTGAGAAATAGAGAAATTCCTCCTGTACAAGATCAACAAGATGAGCTTGACAACCAAAAAAGGCACTTGAATGTTGTATTCATTGGCCATGTTGATGCTGGTAAGTCAACAACCGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAAAGGACTATACAGAAATATGAGAAAGAAGCTAAAGATAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGAGTGAAGGGAAAAACAGTTGAAGTTGGAAGAGCTCATTTTGAGACAGAGTCAACACGGTTTACTATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCTAACATGATTAGTGGTGCATCTCAAGCCGATGTTGGAGTGTTGGTAATTTCTGCTCGAAAGGGAGAATTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTTGTTGTAAATAAAATGGATGATCCAACTGTGAATTGGGCAAAAGAAAGGTATGATGAGATTGAGTCAAAGATGATTCCATTTTTGAGACAATCAGGGTACAATGTGAAGAAAGATGTCATGTTTTTGCCAATATCTGGGCTGATTGGCACCAACTTGCAAACAAGAGTGGATAAAAGCATTTGCTCATGGTGGGATGGCCCTTGCTTATTTGAAGCGCTTGATGCTGTTGAAGTTCCTCTACGAGATCCCAATGGTCCTTTCAGGATGCCTATACTTGATAAATTCAAAGACATGGGAACTGTCGTTATGGGGAAAGTGGAATTTGGCAGTGTCCGAGAGGGAGATTCCTTGTTGGTCATGCCTAATAAGGATCAAGTTAAAGTTGTTGCTGTATTCATTGATGAAAATCGGGTTAGGCGTGCAGGACCCGGTGAAAATTTACGGATTAGGTTATCGGGTGTTGAAGAGGAGGATATATTATCTGGGTTTGTCCTGTCTAGTGTTGCAAATCCAGTACCAACTGTTATTGAGTTTGTTGCTCAGCTGCAAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTATTGCATATACACTCTGTTGTTGAAGAATGTGAAATTGTTGAGCTGTTACAGCAAATAGATCCAAAGACAAAGAAACCAATGAAAAAGAAAGTGCTATTTGTGAAGAATGGTGCTGTTGTTGTGTGCCGTGTTCAGGTTACTAACACGATATGTGTTGAGAAGTTTTCTGATTTTCCGCAACTAGGGAGATTCACTCTTCGCAGTGAAGGAAAAACTGTCGCGGTGGGAAAAGTCACTGGTGTGTGA 1344 0.4115 MVRNREIPPVQDQQDELDNQKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADVGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWAKERYDEIESKMIPFLRQSGYNVKKDVMFLPISGLIGTNLQTRVDKSICSWWDGPCLFEALDAVEVPLRDPNGPFRMPILDKFKDMGTVVMGKVEFGSVREGDSLLVMPNKDQVKVVAVFIDENRVRRAGPGENLRIRLSGVEEEDILSGFVLSSVANPVPTVIEFVAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVVCRVQVTNTICVEKFSDFPQLGRFTLRSEGKTVAVGKVTGV* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3980 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 77 92 IPR031157 -
Ahy13g3980 447 CDD EF1_alpha 25 245 - -
Ahy13g3980 447 CDD eRF3_C_III 339 445 - -
Ahy13g3980 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 21 246 IPR000795 GO:0003924|GO:0005525
Ahy13g3980 447 PANTHER BNAA06G12300D PROTEIN 16 441 - -
Ahy13g3980 447 SUPERFAMILY Translation proteins 244 337 IPR009000 -
Ahy13g3980 447 PRINTS GTP-binding elongation factor signature 25 38 IPR000795 GO:0003924|GO:0005525
Ahy13g3980 447 PRINTS GTP-binding elongation factor signature 104 114 IPR000795 GO:0003924|GO:0005525
Ahy13g3980 447 PRINTS GTP-binding elongation factor signature 120 131 IPR000795 GO:0003924|GO:0005525
Ahy13g3980 447 PRINTS GTP-binding elongation factor signature 164 173 IPR000795 GO:0003924|GO:0005525
Ahy13g3980 447 Gene3D Translation factors 340 447 - -
Ahy13g3980 447 Pfam Elongation factor Tu GTP binding domain 21 228 IPR000795 GO:0003924|GO:0005525
Ahy13g3980 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 256 IPR027417 -
Ahy13g3980 447 Pfam Elongation factor Tu C-terminal domain 340 447 IPR004160 -
Ahy13g3980 447 CDD eRF3_II 252 333 - -
Ahy13g3980 447 Gene3D Translation factors 250 335 - -
Ahy13g3980 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 343 446 IPR009001 -
Ahy13g3980 447 Gene3D - 6 245 IPR027417 -
Ahy13g3980 447 PANTHER TRANSLATION FACTOR 16 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3980 Ahy-Chr13 139183599 139193070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3980 17 447 Eukaryotic Initiation Factors Gene Family AT5G60390 37.327 1.40e-96 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3980 K03267 - gmx:100784412 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3980 13 139183599 139193070 Ahy3g3707 3 136394633 136403776 hybridization