Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3958 ATGCGTGTTGTTACAACAGAGGCACCAACAACAGTAGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTGAGCCAGCGCAACCACATCATTGCAGAAGAAACAGATCCAAGGCCACAAATTCAATCCACAAGGTGCAAGTCCACCATTTCCTCCCTGCTCCTCTCCACATTCTCCAACAACAGCACCAGCAGCAATGATGGCGGGTCACAGAGCAGGAAAAAGAGCAACTTTTCAGCAGCAGCGACGTTGAGGGGGCTGGGGTGCACGGCGGGGGCGCCGCAGGAGGTATCGGTGCCGGCGGTGATCCGAAGCGCGGCGGAATGGGAAGGAAAGAAGGTGAGAAAGAAGAAGCACAAGAGAAGCAGCAAGGGAAGTTGCAGCAATAATGGCGTCGATGTGGATTTTCAAGATGTGTGGTGTGGCACCGCACACGGAATAGGGTTCTCTGCCGATTGTGTTGTTGGCACTTCCAGGAAGAATGCCTCTTCCTCTTCAAGACCCAAAATTGATGTTCACAAGATCAATCACAGACAGCGTTCATCTTCTTGTTTGGGAAGGCGCAGTTTGAACCCAGAAACCATCTCGCTTCTCGACACTGATCCTAGCGACGTTTTCACACCGCGCTCTGCCTCCGAGTTCTTTGGACCCGCCGCATACTATCGCCACCTTCCAGATCCTTCCACCGATGCTTTTCCTGAGATTATGATGCTTCAAGGAGGTATAATCATGGGGAGTAGATACTCACACGATCAATTCAGAGATTTGAGACTTGATGTTGATAACATGTCCTATGAACAATTGCTTGAGCTCGGTGAGAGAATTGGTTATGTCAACACTGGACTTAAAGAAAATGAGATGGGTGCCAACATAAGGAAAACTAAGCTTCAAATTTTAGATGATGCATCGAACCATCAAGTAGATAAAACGTGTACCATTTGCCAGGAGGAGTATGAAGCTGCTGATGAATTGGGGAGGTTACATTGTGAGCACAGCTATCACTTCCACTGTATAAAACAATGGGTTGCTCACAAGAATTTCTGTCCAGTGTGTAAGCAACAAGTTGTGGCTCGCAACAATTGA 1086 0.4797 MRVVTTEAPTTVAEHIKWRRPRNQLSQRNHIIAEETDPRPQIQSTRCKSTISSLLLSTFSNNSTSSNDGGSQSRKKSNFSAAATLRGLGCTAGAPQEVSVPAVIRSAAEWEGKKVRKKKHKRSSKGSCSNNGVDVDFQDVWCGTAHGIGFSADCVVGTSRKNASSSSRPKIDVHKINHRQRSSSCLGRRSLNPETISLLDTDPSDVFTPRSASEFFGPAAYYRHLPDPSTDAFPEIMMLQGGIIMGSRYSHDQFRDLRLDVDNMSYEQLLELGERIGYVNTGLKENEMGANIRKTKLQILDDASNHQVDKTCTICQEEYEAADELGRLHCEHSYHFHCIKQWVAHKNFCPVCKQQVVARNN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3958 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 359 IPR045191 GO:0061630
Ahy13g3958 361 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 7 359 - -
Ahy13g3958 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 360 IPR013083 -
Ahy13g3958 361 SUPERFAMILY RING/U-box 311 357 - -
Ahy13g3958 361 SMART ring_2 312 352 IPR001841 -
Ahy13g3958 361 Pfam Ring finger domain 311 353 IPR001841 -
Ahy13g3958 361 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3958 Ahy-Chr13 138972810 138975319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3958 12 267 C3H Transcription Factor Family AT1G73760 39.373 1.17e-39 140
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3958 13 138972810 138975319 Ahy3g3685 3 136167998 136170490 hybridization