Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3957 ATGGGTAAGAAGAAGAAGAGGGTTGCGTCCAAGGTGTGGTGCTATTACTGCGATCGCGAATTCGACGATGAGAAGATCTTGGTGCAGCATCAGAAGGCCAAGCACTTCAAGTGCCATGTATGCCACAAGAAGCTCTCCACCGCCGGCGGTATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTGCCGAATGCGAAACCTGGTAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATGTCTTGGCTGCTCATTATGGAGAAGAAGACGATGATGTTCCATCAAAGGCAGCAAAGGTGGACATACCATCAACACAGCTTGTAGGTGGAATGGTGCCACCTCCTTTGGGTACAGGATATCCTCCTCGACCAGCGGTACCGCCAATGTATAATCCAGCCGTGCCTGTCCCCCCAAATGCTTGGGCTGTTCCACCTCGACCGGCTCAGCCATGGTATCCCCAACCTCCATCTGTTTCGATTCCACCACCTGCTCCTTACGCACAACAGCCATTATTCCCCGTGCAGAACGTGAGACCGCCACTGCCATCAACTGCTCCTTCTCCACTCCAAACTCAGGTTACTCCTCCTGGGATGCCTTCATCTACACCTTCTGTCCCTGTTTCGCAACCTTTGTTTCCTGTTATTACAACTCAAAGTTCAACATTTTCTCCTGCTCCTCTATCTTCAAGTGCTCCATCCATAAATCCAGTCATATCCTCAAGTGCCCCTGTTGATTCCCATTTGGGTGCCAACTCTGTTGTAAATGCTTATCAGGCAATAGGGATTCCAGGTGGGACAGCGGGTAACTCACATTCCTATGCATCTGGTCCAAATACCGGTGGCCCTTCAATCGGACCTCCCCCGGTAATTGCAAACAAAGCTCCTGCGCCTCAGCCTGCTGCTAATGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTCTGCCAAAATATCAGGTTCATGATGAAACTAGCCAGATGAGCTCAATTGATGCAGCAATAGATAAGAGGATACTTGAAAGCAGGTTGGCTGGTCGCATGGCGTTCTAG 1098 0.4991 MGKKKKRVASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEEDDDVPSKAAKVDIPSTQLVGGMVPPPLGTGYPPRPAVPPMYNPAVPVPPNAWAVPPRPAQPWYPQPPSVSIPPPAPYAQQPLFPVQNVRPPLPSTAPSPLQTQVTPPGMPSSTPSVPVSQPLFPVITTQSSTFSPAPLSSSAPSINPVISSSAPVDSHLGANSVVNAYQAIGIPGGTAGNSHSYASGPNTGGPSIGPPPVIANKAPAPQPAANEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILESRLAGRMAF* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3957 365 MobiDBLite consensus disorder prediction 196 214 - -
Ahy13g3957 365 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Ahy13g3957 365 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Ahy13g3957 365 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Ahy13g3957 365 PANTHER ZINC FINGER PROTEIN 207 1 365 - -
Ahy13g3957 365 SMART c2h2final6 12 35 IPR013087 -
Ahy13g3957 365 SMART c2h2final6 36 59 IPR013087 -
Ahy13g3957 365 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 365 - -
Ahy13g3957 365 MobiDBLite consensus disorder prediction 188 214 - -
Ahy13g3957 365 Gene3D Classic Zinc Finger 2 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3957 Ahy-Chr13 138957681 138960813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3957 1 365 C2H2 Transcription Factor Family AT1G30970 62.371 2.13e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy13g3957 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3957 - - gmx:100789368 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3957 13 138957681 138960813 Ahy3g3684 3 136160677 136163833 hybridization