Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3946 ATGTTGGGGAATACGAAGCATGATGTGTTCCTCAGCTTTAGAGGAGAAGACACACGCAACAGCTTTACCACTCATCTTTACGCAGCCTTAAGCGCTAAAAGGATCAAGACTTACATGCATGACACGCGCGGTGATGATGACGGAGGAGAAGAGAAAGAAGCAATACAAGAATCAAATATCTATGTGATCATTTTCTCTCAACACTATGCCTATTCGGCGCGGTGTTTGGACCAACTCACAAAGATTCTGGAATGCAAGGAGAGATATGGAAGGGATGTCATACCTGTTTTCTATAAGATGGATCCATCAAATGTTGCCAATCAAACAGGCAGTTATGCTGATGCGTTTGTTAAGCATCAACAACGATTTGGAGACAAAGTGCAGAGGTGGAAGCTTGCTCTAACTCAAGTTGCTGGATTATCTCCCCCTCGTTCAAAAATAAACAGTGCCAGTCCTGATTACATACTTGTTGAAGAAATTGTTCAACACATTTGGAGAAGATTGAAAAGCAATTACTCAACTGATTACCAAGGACTGGTTGGAATTCACAACCATATTGCACAAATCCACTCCTTGTTGCGTGTTGAGTTAGAAGCCGTTCGGATCATAGGAATATGCGGCATTGGAGGAATAGGTAAGACAACAATTGCTGGTGCATTGTATCATGAATTGTCATCCCAATTCAGTTTCAGCACTTTTGCTGTAAATGTTCAACAACAAATAGAAAACCATGGGATGCAGCACACACAAAGCAAATATATATCAGAGCTTCTAGAAGAAAAAATGCCTGCAGATTATTTGGGATTGAGAGTGTTAACAGAAAAGCTTAAAGTGGCCAAGGTTCTCCTCATTCTTGATGATATGAACAATTCAGCTCAAATAAGAGATTTCATTGGAGGACATGGTATCTTTGGCCTGGGAAGTAGGATCATTGTGACAAGTAGGAGCTTGCAAACGCTTAAGGATGCTGGAGTTGATGAGATATATGAGACTAAGGAGATGAACTTTCAAGATTCCCTACAACTATTCAGTTTAAATGCCTTCAAGCAAAAAAATCCAACAGAAAATTATATGAACTTATCAAGAATGATGTTAAATTACGCAAAAGGGATTCCTTTGGCTCTCAAAGTTTTAGGATCAATGCTTCATGGTAGCAGAGAGGAAGAATGGGAACGTGTATTGCAAAAGCTTGAAAAGATTCCCAATCTTAAAACCTATGACTTGTTGAAACTGAGTTATGATGGGCTTAGTGAAGAACAGAAGGATATGTTTCTTGACATAGCTTGCTTCTATAGAGAGGGACATGATGTGAATACTGTAAAACAAGCATTCGATAGCTGCGGTTTCAATGCTGCCACTGGAATCAGAGTTCTCAGTGATAGAGGCCTCATATCTATGTTGAGAGGTGAACTGATGATGCATGATCTAATACGGGAAATGGGTCAAGAAATAGTTCATCAACAGTGTGCTAATGAACCTGGAAAACGAAGTCGATTATGGAAGCATGAAGACATTTACCATGTTATAAGAGAAAACAAGGGGACGGATGCTATCCGGTGTGTATTTCTTGACATGTGCAAAATCAAAGAAGTTCAACTACATCCTGAAACTTTCAAAATGATGCATAATCTGAGACTGCTCCAGTTCTACAAGTCTAGCTCAATTCAAGCCTTAAAAGTGAGCCTTCCTGCATTTCTTCATAGTCTCCCAGATAGTTTATGGTTTCTGTGTTGGAATGGCTTCCCTCAAAGATCTTTGCCACAGCACTTCTGCCCCAAAAATCTTGTTACACTCGACATGCGTGATAGTCAACTTGAACAACTTTGGGAAAAGGATCAGAAGTTACCAAATTTGAAAAGACTTGACCTCAGTGGTTCCAAGAACCTTGTTCAACTACCAGACCTTTCCCACTGCCCAAATATTGAAGAAATATTTCTCAGCCACTGCAAAAGCTTGGTTCGAGTTTACTCCTCAAGTTTCCTTAACAAGCTCAACTGCGTATGGCTAAACGGCTGCACTGAGCTTAGAAATCTAAATCTTCCAAGCAACATTCTGTCAAAATCTTCAGGCTTAATAGTTCTCAATGACTGTACCAACCTTGAGTTGTTTTCAATAAGCATCACCACAAAGGATGTTGTGTTACATGGTTGTTCCCGCAGTAGATCAATAGAGAGTCTCTTCAGAAACTGTTTGCCAGGGGATATGATTCGGTGTATGATGGGAACAAGAGGAGGGTCCTTATTTGAGAGCTTTTCTGACACTTTTGACCCCAATGGGGGTGCTGCTGCTAATTTAGATGATGAACCAATGGATAATATACACTTACTAAACTTGAAAGTGTTAAGAGAAGGTTCACCTTCATTATTTCCAAGTCTCTCAGAGCTTTGTTGGTTAGATCTCTCTTACTGTGAATCCCTCACATCCCTTCCAATTAACCTTTTTAAGCTGAAATGGCTAAGAAAACTATATCTTCGTGGCTGCTCAAATCTCGAGAAGCTCCCTGAGATAGAAGAGGATATGGAAAATTTAATGGTGCTCATCTTAGATGAATCAGGAATACAAGAATTACCTTCAACAATGCAAAATTTGGTAGGTCTTGAGGAGTTGAGCTTGCATCGTTGCAGAAGCCTTGTGTTCATTCCATCTTCAATTGGACGTCTCAGCAAACTCTGCATTCTTGATCTTACCTACTGTGAAGCACTTGAATCTCTTCCTAGCAGCATTTTCAACCTGAAGTTGACAAAGCTTGATTTGCATGGTTGCTCAATGCTGAAGACTTTACCAGAGATCATGGAACCTGCAGAATCTGTTGCTCACATGAACCTGGCAAAAACAGCAATTAAAGAAATACCCTCATCCTTGGCCTTTTTGGTTGGGCTTCAAACCTTGCAGCTCAACTTGTGCAAAGATCTTGAGTTTCTTCCAAACAGCATTGGTAATCTAAACCACCTCTCCAAGCTTGATTTTTCAGGCTGTGAGAAACTATCAGAACTTCCTAGGGACATTGGAAACTTGTCATCATTAAGGGAATTGTCGCTGCACGAAAGCAGCATTGTGGACCTTCCTGAGAGTATTGCTCATCTGTCAAGCTTGAAATCACTGGATTTAAGTGATTGCAAGAAGCTTGAAAATATCCCAGGCCTTCCACCATTTTTAGAACACTTTGTGGCGTTTGATTGCCCATCTGTTAGGAGAGTGTCAAGTTCAGGATTTGACATTAAACTTCCATCAGATTCCAAAGATGGTATTTTCAAGTTTCACCTTACCAATAGCCAAGAACTGACTCAAAGTTCTCAGAGTAATATTGCTGGTGATGCATGGCAAAGAATGCTAGATACAGCATATAGGTCTGTGTTGTTTTGCTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTAATCGTTGCAAGGGACATTCAGTAACATTGAAGCAGAGTTCTCTAAATTGGTGCAGTGATAACAGGTTCATTGGTTTTGCTTTATGTGTGGTTTTTGGACTCGAAGGTATGCATGATGAAGAATGTAAATATAGTGTTTTTAGCTATAGATTCACATATGAATGTGATGATGGCATTCATGTTGTTCCCAGCAATGATCAGCTAAGATACTATTTCAATTGGAAGGACAGACAGAGATTCATTCTTCATGATCACACATTCATTTGGAAATCTTACTTGGAGACTCAGACCATCAACCACATGCTGTCTCATAATGCACACAACTTCAGTTTCCAGATATGCAAGTACGATGTTGGTCGCTCTTGGCCAAATTATAGGCCAAGGTTCAATATAAAGGAGTGTGGAATATCTCCCCTTTATACCAAGTGA 3825 0.4016 MLGNTKHDVFLSFRGEDTRNSFTTHLYAALSAKRIKTYMHDTRGDDDGGEEKEAIQESNIYVIIFSQHYAYSARCLDQLTKILECKERYGRDVIPVFYKMDPSNVANQTGSYADAFVKHQQRFGDKVQRWKLALTQVAGLSPPRSKINSASPDYILVEEIVQHIWRRLKSNYSTDYQGLVGIHNHIAQIHSLLRVELEAVRIIGICGIGGIGKTTIAGALYHELSSQFSFSTFAVNVQQQIENHGMQHTQSKYISELLEEKMPADYLGLRVLTEKLKVAKVLLILDDMNNSAQIRDFIGGHGIFGLGSRIIVTSRSLQTLKDAGVDEIYETKEMNFQDSLQLFSLNAFKQKNPTENYMNLSRMMLNYAKGIPLALKVLGSMLHGSREEEWERVLQKLEKIPNLKTYDLLKLSYDGLSEEQKDMFLDIACFYREGHDVNTVKQAFDSCGFNAATGIRVLSDRGLISMLRGELMMHDLIREMGQEIVHQQCANEPGKRSRLWKHEDIYHVIRENKGTDAIRCVFLDMCKIKEVQLHPETFKMMHNLRLLQFYKSSSIQALKVSLPAFLHSLPDSLWFLCWNGFPQRSLPQHFCPKNLVTLDMRDSQLEQLWEKDQKLPNLKRLDLSGSKNLVQLPDLSHCPNIEEIFLSHCKSLVRVYSSSFLNKLNCVWLNGCTELRNLNLPSNILSKSSGLIVLNDCTNLELFSISITTKDVVLHGCSRSRSIESLFRNCLPGDMIRCMMGTRGGSLFESFSDTFDPNGGAAANLDDEPMDNIHLLNLKVLREGSPSLFPSLSELCWLDLSYCESLTSLPINLFKLKWLRKLYLRGCSNLEKLPEIEEDMENLMVLILDESGIQELPSTMQNLVGLEELSLHRCRSLVFIPSSIGRLSKLCILDLTYCEALESLPSSIFNLKLTKLDLHGCSMLKTLPEIMEPAESVAHMNLAKTAIKEIPSSLAFLVGLQTLQLNLCKDLEFLPNSIGNLNHLSKLDFSGCEKLSELPRDIGNLSSLRELSLHESSIVDLPESIAHLSSLKSLDLSDCKKLENIPGLPPFLEHFVAFDCPSVRRVSSSGFDIKLPSDSKDGIFKFHLTNSQELTQSSQSNIAGDAWQRMLDTAYRSVLFCFPGSAVPHWFPNRCKGHSVTLKQSSLNWCSDNRFIGFALCVVFGLEGMHDEECKYSVFSYRFTYECDDGIHVVPSNDQLRYYFNWKDRQRFILHDHTFIWKSYLETQTINHMLSHNAHNFSFQICKYDVGRSWPNYRPRFNIKECGISPLYTK* 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3946 1274 Gene3D - 3 169 IPR035897 -
Ahy13g3946 1274 SMART AAA_5 199 340 IPR003593 -
Ahy13g3946 1274 Pfam C-JID domain 1122 1273 IPR045344 -
Ahy13g3946 1274 Gene3D Ribonuclease Inhibitor 936 1097 IPR032675 -
Ahy13g3946 1274 Gene3D Ribonuclease Inhibitor 765 935 IPR032675 -
Ahy13g3946 1274 Gene3D Ribonuclease Inhibitor 486 738 IPR032675 -
Ahy13g3946 1274 Pfam Leucine Rich Repeat 594 610 IPR011713 -
Ahy13g3946 1274 SUPERFAMILY L domain-like 783 1063 - -
Ahy13g3946 1274 Pfam TIR domain 6 182 IPR000157 GO:0007165
Ahy13g3946 1274 SUPERFAMILY "Winged helix" DNA-binding domain 405 509 IPR036390 -
Ahy13g3946 1274 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 140 IPR035897 -
Ahy13g3946 1274 Pfam NB-ARC domain 191 399 IPR002182 GO:0043531
Ahy13g3946 1274 SMART till_3 6 140 IPR000157 GO:0007165
Ahy13g3946 1274 Gene3D - 170 328 IPR027417 -
Ahy13g3946 1274 ProSiteProfiles TIR domain profile. 5 168 IPR000157 GO:0007165
Ahy13g3946 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 427 IPR027417 -
Ahy13g3946 1274 SMART LRR_typ_2 1005 1028 IPR003591 -
Ahy13g3946 1274 SMART LRR_typ_2 840 862 IPR003591 -
Ahy13g3946 1274 SMART LRR_typ_2 615 638 IPR003591 -
Ahy13g3946 1274 SMART LRR_typ_2 887 911 IPR003591 -
Ahy13g3946 1274 SMART LRR_typ_2 792 816 IPR003591 -
Ahy13g3946 1274 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 705 IPR044974 GO:0006952
Ahy13g3946 1274 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 866 1196 IPR044974 GO:0006952
Ahy13g3946 1274 Gene3D - 334 417 IPR042197 -
Ahy13g3946 1274 SUPERFAMILY RNI-like 573 848 - -
Ahy13g3946 1274 PRINTS Disease resistance protein signature 613 629 - -
Ahy13g3946 1274 PRINTS Disease resistance protein signature 202 217 - -
Ahy13g3946 1274 PRINTS Disease resistance protein signature 275 289 - -
Ahy13g3946 1274 PRINTS Disease resistance protein signature 368 382 - -
Ahy13g3946 1274 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 5 705 - -
Ahy13g3946 1274 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 866 1196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3946 Ahy-Chr13 138841915 138846972 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3946 791 963 WRKY Transcription Factor Family AT4G12020 37.931 3.22e-13 72.8