Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3938 ATGGCCGCCAACAACAATCCGCATTCTCTCACTGATCAGAATGCGAATTCTATGCCTCCGCCTATTCTTGATTATCAATTCTCCACTACCACTGCTCTTAGGCTTCTGGTCGTTGATCATGATCCTGAACACTTAAGACTTATTCAAGATATGGCTTTTCAATGCAACTATCAAGTGACCACATGCTTCGAGGGTTCTCATGCTTTGAATCTTCTTCGGGAGAGCAGTGGGTGTTTCGATGTGGTACTATGTGATGTTCATATGCCAGGGATAATGGATGATGGTTCTCGATTACTTGACCATGTTCTCCAAGAATTCAATATTCCTGTCGTAATGATGTGTGCAACAGATGATGAGTCATCAATTGCAGTGATGGAGGGTATGAAAAAGAAAGGGGCTTGTTATAATTTAGTTAAACCTCTTAGCGAGCAAGATTTGATGAACATATGGCAGAATGTGATGGAGAAAACCCAGAAAGAAGTTTTCTATGACGATGATGATGAAAGCAAAGGAACAGTGAATAGAAGGAAGAGGAGCTTATCAACCGAAAGAGATGATCATGATGTTCAGTCCAACACTCCCAACAAAAAGCCACGTTTTATTTGGACCCAAGAAAGGCATCAAATGTTCGTCGATGCTGTACTCCAACTAGGGATTGATAAAGCTGTGCCAAAGAAAATTCTAGAATTGATGGATATCCCTGACTTGACAAGGGAAAATGTAGCAAGCCATCTGCAGAAATATCGGATGCATCTTAAGCAGAAGAGTGAGGAGACTAAGCAAACAAATATTAATGGGAAGCTAAATGTTAATAGAGAAGCTAATAAGCAACTTTGTGCACCTTTGAGGGTTCAAGCTGCAACCAACATTCCTCAAATTCCACAAACACTTCAAATTCCACAAACACTGCCCCTTCATCACCAATATGTGCCAACTGTTAGTGCTGCACCTCATGCTTTGAAATTCCCTAATAGTAATCCCTTTGGTCTCATCAACAACAATGGCATTGTTGGAAGTAATATGGCACTTAATCATCAGAATAATGATTATGGTCGTTACATTATTATGAACCTAATGCAACAGCAACAACAGCAACAATCACTGGTGCAAAGTCATTATTATCCAATGATGGCTCCTCAATCCTGTGATGGAGCTGCTTTTCAAGGGGGAACGAGGGGAGTCAGCGGAAGTGGCAGCATTGCTGAGATTCTGAATGATGGCTATATATCATCATCATCAGCACCACCCTCATCATCATCGTCCCTTTCTCCAACAGGATTCTTCTCAAGAACTCACCACCAGCACAATCATCAGCAGCTTCCAGCCGGGGACCTTGACGACAATTTTTGGGACGGCCTATATACTCTTTGA 1371 0.4172 MAANNNPHSLTDQNANSMPPPILDYQFSTTTALRLLVVDHDPEHLRLIQDMAFQCNYQVTTCFEGSHALNLLRESSGCFDVVLCDVHMPGIMDDGSRLLDHVLQEFNIPVVMMCATDDESSIAVMEGMKKKGACYNLVKPLSEQDLMNIWQNVMEKTQKEVFYDDDDESKGTVNRRKRSLSTERDDHDVQSNTPNKKPRFIWTQERHQMFVDAVLQLGIDKAVPKKILELMDIPDLTRENVASHLQKYRMHLKQKSEETKQTNINGKLNVNREANKQLCAPLRVQAATNIPQIPQTLQIPQTLPLHHQYVPTVSAAPHALKFPNSNPFGLINNNGIVGSNMALNHQNNDYGRYIIMNLMQQQQQQQSLVQSHYYPMMAPQSCDGAAFQGGTRGVSGSGSIAEILNDGYISSSSAPPSSSSSLSPTGFFSRTHHQHNHQQLPAGDLDDNFWDGLYTL* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3938 456 CDD REC_typeB_ARR-like 36 153 - -
Ahy13g3938 456 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 370 IPR045279 GO:0009736
Ahy13g3938 456 MobiDBLite consensus disorder prediction 164 197 - -
Ahy13g3938 456 SMART REC_2 33 150 IPR001789 GO:0000160
Ahy13g3938 456 SUPERFAMILY Homeodomain-like 195 253 IPR009057 -
Ahy13g3938 456 Gene3D - 193 255 - -
Ahy13g3938 456 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 251 IPR006447 GO:0003677
Ahy13g3938 456 MobiDBLite consensus disorder prediction 164 193 - -
Ahy13g3938 456 MobiDBLite consensus disorder prediction 411 438 - -
Ahy13g3938 456 ProSiteProfiles Response regulatory domain profile. 34 154 IPR001789 GO:0000160
Ahy13g3938 456 Gene3D - 32 169 - -
Ahy13g3938 456 Pfam Response regulator receiver domain 36 149 IPR001789 GO:0000160
Ahy13g3938 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 253 IPR017930 -
Ahy13g3938 456 MobiDBLite consensus disorder prediction 411 442 - -
Ahy13g3938 456 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 29 370 - -
Ahy13g3938 456 SUPERFAMILY CheY-like 33 157 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3938 Ahy-Chr13 138777862 138779671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3938 31 261 Response Regulator Gene Family AT4G31920 42.017 4.92e-47 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy13g3938 Response_reg 1.60E-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3938 - K14491 adu:107481405 779.245