Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3934 ATGCCGCAGGTGGTTAGCCTTCACCAAAACGTGATCATGAAGCTGGTCGAGTTCCTCCTCGGAAGGGCTATAGCACCGCATGATGTGGCTAGCATGGTGGTCAGGTGTCCGCAGTTAGTAGCACTGAGAGTGGAGCTCATGAAGAACAGTTTTTACTTCTTTAAGAGTGAGATGGGAAGACCACTGAAAGAGCTTGTAGAGTTCCCTGAATACTTTACTTACAGTCTGGAGTCTAGGGTCAAACCAAGATACCAAAGGCTAAAGAGCAAGGGGATAAGGTGTTCATTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGGTTGCAGGGTAATTATATTGAGACTGAAAGTATAGGTCCGACATTTTTAATGGGTGGGAAATTGAACCTGCCAGGGAATGCAATTCTTTCAGATGAGGAAGAGGAGAGTGATGATGAAGTACTATACCGAAGAACTGTTTCTTTATAG 477 0.4423 MPQVVSLHQNVIMKLVEFLLGRAIAPHDVASMVVRCPQLVALRVELMKNSFYFFKSEMGRPLKELVEFPEYFTYSLESRVKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGNYIETESIGPTFLMGGKLNLPGNAILSDEEEESDDEVLYRRTVSL* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3934 158 Pfam mTERF 1 108 IPR003690 GO:0003690|GO:0006355
Ahy13g3934 158 PANTHER EXPRESSED PROTEIN 14 141 - -
Ahy13g3934 158 Gene3D Transcription termination factor 3, mitochondrial 1 118 IPR038538 -
Ahy13g3934 158 SMART mt_12 62 93 IPR003690 GO:0003690|GO:0006355
Ahy13g3934 158 SMART mt_12 30 61 IPR003690 GO:0003690|GO:0006355
Ahy13g3934 158 PANTHER CGI-12 PROTEIN-RELATED 14 141 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3934 Ahy-Chr13 138724520 138725175 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ahy13g3934 mTERF 1.70E-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3934 K15032 - aip:110270417 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3934 13 138724520 138725175 Ahy15g2698 15 143336928 143339292 PCT
Ahy13g3934 13 138724520 138725175 Ahy5g2536 5 100946832 100949236 PCT