Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3921 ATGGCAGATGTGGAAGGAGATACTGCAGCGGCGGCGTCAGCGCCAAAGAAGAGAACGTTCAAGAAGTTCAGCTTCAGAGGAGTGGATCTGGACGCGCTCCTGGACATGTCTACCGACGAGCTCGTGAAGCTGTTCACCGCGCGCGCTCGCAGAAGGTTCCAGAGAGGTCTGACAAGGAAGCCGATGGCGCTTATCAAGAAGCTCCGGAAAGCGAAGAGGGAAGCTCCGGCGGGTGAGAAGCCTGAGCCAGTTCGCACACACCTTCGCAACATGATAATTGTTCCTGAGATGATCGGTAGCATCATTGGTGTTTACAACGGAAAGACGTTCAACCAGGTTGAGATTAAGCCTGAGATGATTGGCCACTACCTTGCCGAGTTCTCCATATCTTACAAGCCCGTCAAGCACGGCAGGCCTGGTATTGGTGCCACCCACTCTTCCAGGTTCATCCCTCTCAAATGA 462 0.539 MADVEGDTAAAASAPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3921 153 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 7 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy13g3921 153 PANTHER BNAA03G55820D PROTEIN 5 153 - -
Ahy13g3921 153 TIGRFAM uS19_arch: ribosomal protein uS19 20 153 IPR005713 GO:0003735|GO:0006412|GO:0015935
Ahy13g3921 153 ProSitePatterns Ribosomal protein S19 signature. 106 130 IPR020934 GO:0003723
Ahy13g3921 153 PRINTS Ribosomal protein S19 family signature 106 118 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy13g3921 153 PRINTS Ribosomal protein S19 family signature 118 133 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy13g3921 153 PRINTS Ribosomal protein S19 family signature 86 105 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy13g3921 153 Gene3D 30s Ribosomal Protein S19; Chain A 9 153 IPR023575 GO:0003735|GO:0005840|GO:0006412
Ahy13g3921 153 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 5 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy13g3921 153 Hamap 30S ribosomal protein S19 [rpsS]. 49 142 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy13g3921 153 Pfam Ribosomal protein S19 51 136 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ahy13g3921 153 SUPERFAMILY Ribosomal protein S19 56 137 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3921 Ahy-Chr13 138629794 138630646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3921 1 153 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.582 1.92e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3921 K02958 - gmx:100777379 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3921 13 138629794 138630646 Ahy3g3649 3 135827302 135828188 hybridization