Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3911 ATGTCTGCTCCCGCCGCCGTTGAACAGCCGATGGAGAAGCCGAAGTCAGTCAAGGAGAAAAAGCCCAAGGCTCCCAAGAAGCAGCCCAAACAGGCCAAAACCGCTTCTCACCCTCCATATTTTCAGATGATTAAGGAGGCGTTGGTGGCTCTGAACGAGAAAGGCGGTTCGAGCCCTTACGCGATAGCCAAGTACATGGAGGAGAAGCACAAGGCGGTGCTGCCCGAGAATTTCAGGAAGATTCTTGCGTTGCAGCTCAAGAACCAAACCGCCAAAGGGAACCTCCTCAAGATCAAGGCCTCCTACAAGCTCTCCGGTGCCGCCAAGAAGGACAAGAAGGAAATCTCGATGAAGCAGCAGAAGCCGCAGCAGCGCCCCAAGCGGAGTGCCTCCGTGGCGGCGAAGGTTGGTGTTAAGAAGACGAAGAAGGTGTCGACGCCGGCAAAGCCGAAGCAGCCAAAGTCGCTAAAGTCTCCGGCAAAGAGGGCCAGGAAGGGCACTGCAGCTGCCTGA 513 0.5634 MSAPAAVEQPMEKPKSVKEKKPKAPKKQPKQAKTASHPPYFQMIKEALVALNEKGGSSPYAIAKYMEEKHKAVLPENFRKILALQLKNQTAKGNLLKIKASYKLSGAAKKDKKEISMKQQKPQQRPKRSASVAAKVGVKKTKKVSTPAKPKQPKSLKSPAKRARKGTAAA* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3911 170 PANTHER HISTONE H1 11 168 - -
Ahy13g3911 170 SUPERFAMILY "Winged helix" DNA-binding domain 33 114 IPR036390 -
Ahy13g3911 170 CDD H15 34 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy13g3911 170 MobiDBLite consensus disorder prediction 105 170 - -
Ahy13g3911 170 PRINTS Histone H5 signature 23 44 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ahy13g3911 170 PRINTS Histone H5 signature 154 170 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ahy13g3911 170 PRINTS Histone H5 signature 50 67 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ahy13g3911 170 SMART h15plus2 34 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy13g3911 170 Gene3D - 32 121 IPR036388 -
Ahy13g3911 170 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 36 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy13g3911 170 PANTHER HISTONE H1 11 168 - -
Ahy13g3911 170 MobiDBLite consensus disorder prediction 1 39 - -
Ahy13g3911 170 Pfam linker histone H1 and H5 family 37 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy13g3911 170 MobiDBLite consensus disorder prediction 105 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3911 Ahy-Chr13 138558786 138559675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3911 33 104 Single Myb Histone (SMH) Gene Family AT1G72740 37.500 1.45e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3911 K11275 - gmx:100500169 195.667